Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120780.seq
         (555 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   4.1  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    21   7.2  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   7.2  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 456 RVIASAFTQTTRSISSTPEPEHVLFXCVARRNC 554
           R  ++A + +  S S +PEPE V    +  R C
Sbjct: 205 RTASTASSASNYSPSQSPEPESVRPLSLVVRRC 237


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 90  SFDACITYKSQCSPD 134
           S+  C+  K +CSPD
Sbjct: 47  SYVDCLLEKGRCSPD 61


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -2

Query: 191 FXTFDEVAVADKPSVXMIRVGRTL*LVCYARVERHDGRENAAVNSHLS 48
           F      ++ DKP+    ++   L  + Y   E +   E   +N+HLS
Sbjct: 15  FFAITPSSIYDKPTKLYQKLYPVLMFLIYTITEIYSVYERRYMNAHLS 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,681
Number of Sequences: 336
Number of extensions: 1878
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13725787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)