Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120780.seq
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    26   4.3  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   9.9  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   9.9  

>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +3

Query: 354 PNNXSFI*YITTKRRXTLYATIYNIPEFXQAARXRVIASAFTQTTRSIS 500
           PN    + Y+ +    TL  T+YNI  F  AA   V  S F      IS
Sbjct: 288 PNILQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRIS 336


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 96   DACITYKSQCSPDAYHXDGWFICNSHLIKRXKMS 197
            D C+  KSQ S D  +   + +C    I R K S
Sbjct: 1159 DICLLSKSQSSGDTNNPKSFQLCKIQSISRKKES 1192


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 174 LIKRXKMSKMVLPIFDEDDNQFXMTIAGI 260
           ++K+ ++ K   PIF EDD    + I G+
Sbjct: 537 IVKKARIEKSGKPIFAEDDRLKQLYIEGV 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,888,621
Number of Sequences: 5004
Number of extensions: 30226
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)