Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120780.seq
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ...    28   3.9  
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ...    28   3.9  
Z92809-1|CAB07270.1|  286|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6b protein.
          Length = 1345

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 406 YMRQSIIYRSXHKRHANAL*HQRLRKLQEAFLAHR 510
           YMR+ +  +  H  H   L  Q +++LQEAF  HR
Sbjct: 585 YMRRRLRAQKAHDEHGEELPCQ-MKELQEAFAGHR 618


>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6a protein.
          Length = 1343

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 406 YMRQSIIYRSXHKRHANAL*HQRLRKLQEAFLAHR 510
           YMR+ +  +  H  H   L  Q +++LQEAF  HR
Sbjct: 583 YMRRRLRAQKAHDEHGEELPCQ-MKELQEAFAGHR 616


>Z92809-1|CAB07270.1|  286|Caenorhabditis elegans Hypothetical
           protein R17.1 protein.
          Length = 286

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 281 LFLYFXLNASDRHXELIVVFVENGQN 204
           LFL   +N S++  E+++++ +NG N
Sbjct: 202 LFLKHWINGSNQWLEILIMYAQNGSN 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,726,289
Number of Sequences: 27780
Number of extensions: 179297
Number of successful extensions: 404
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)