Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120780.seq
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   6.3  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   6.3  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -3

Query: 172 WLLQINHPSS*YASGEHCDLYVMHASNDTMDA 77
           W+  INHP       + C    +H    T DA
Sbjct: 334 WIYAINHPRYRQELQKRCKWMGIHEPETTSDA 365


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 124 VRPTRIMXTDGLSATATSSNVXKCQKWFCPFS 219
           VRP  +         AT+  + K  ++F PFS
Sbjct: 339 VRPATVQYDTCCQGRATAIYIDKVSRFFFPFS 370


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -3

Query: 172 WLLQINHPSS*YASGEHCDLYVMHASNDTMDA 77
           W+  INHP       + C    +H    T DA
Sbjct: 334 WIYAINHPRYRQELQKRCKWMGIHEPETTSDA 365


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 277 KRYQAXFNSKRNQLPRGV*SKQYDASR 357
           +RY+  +N K   L      K+Y  SR
Sbjct: 17  RRYEKLYNEKEKLLEERTSRKRYSRSR 43


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 268 KXRKRYQAXFNSKRNQLPRGV*SKQYDASR 357
           K  +RY+   N K+  L      K+Y  SR
Sbjct: 247 KKDRRYEKLHNEKKKLLEERTSRKRYSRSR 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,328
Number of Sequences: 438
Number of extensions: 2498
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)