Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120780.seq
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32910.1 68415.m04035 expressed protein                             31   0.68 
At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putativ...    30   1.2  
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ...    30   1.2  
At4g28720.1 68417.m04108 flavin-containing monooxygenase family ...    29   1.6  
At5g62680.1 68418.m07866 proton-dependent oligopeptide transport...    27   6.4  
At2g39180.1 68415.m04812 protein kinase family protein contains ...    27   6.4  
At1g44575.2 68414.m05119 photosystem II 22kDa protein, chloropla...    27   8.4  
At1g04180.1 68414.m00408 flavin-containing monooxygenase family ...    27   8.4  

>At2g32910.1 68415.m04035 expressed protein 
          Length = 691

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 132 DAYHXDGWFICNSHLIKRXKMSKMVLPIFDEDD 230
           D+Y  D ++IC  H ++R   + MV P   +DD
Sbjct: 610 DSYRRDPYYICERHALERPPRTYMVSPGRQDDD 642


>At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 361

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 290 RXLIPSATNYQEXFNLNSMMQAEQXIFHLIYNNEEAXNVIC 412
           R ++ + T+Y + FNL S   A + + HLI + +E   V+C
Sbjct: 147 RKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEI-VVC 186


>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 494

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 290 RXLIPSATNYQEXFNLNSMMQAEQXIFHLIYNNEEAXNVIC 412
           R ++ + T+Y + FNL S   A + + HLI + +E   V+C
Sbjct: 147 RKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEI-VVC 186


>At4g28720.1 68417.m04108 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenases YUCCA [gi:16555352],
           YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from
           Arabidopsis thaliana
          Length = 426

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
 Frame = -3

Query: 331 KXLLVIGCAWN*XSLDTSFXISNXM--PAIVIXN*LSSSSK--MGKTIFDIXKRLMRW 170
           K +LV+GC  +   ++ S  ++N    P++V+ + L    +  MGK+ F++  +++RW
Sbjct: 193 KKVLVVGCGNS--GMEVSLDLANHFAKPSMVVRSSLHVMPREVMGKSTFELAMKMLRW 248


>At5g62680.1 68418.m07866 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 616

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 99  ACITYKSQCSPDAYHXDGWFICNSHLIKRXKMSKMVLPIF 218
           A +T + +  PD    D W +C    ++  K    VLPI+
Sbjct: 320 AILTPEDKLQPDGKPADPWKLCTMQQVEEVKCIVRVLPIW 359


>At2g39180.1 68415.m04812 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 776

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 123 CSPDAYHXDGWFICNSHLIKRXKMSKM 203
           CSP     DGWF  N+ ++K  +++ +
Sbjct: 336 CSPRGNCGDGWFAFNASILKESELTSL 362


>At1g44575.2 68414.m05119 photosystem II 22kDa protein, chloroplast
           / CP22 (PSBS) identical to photosystem II 22 kDa
           protein, chloroplast [precursor] SP:Q9XF91 from
           [Arabidopsis thaliana]; contains Pfam profile PF00504:
           Chlorophyll A-B binding protein
          Length = 205

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +2

Query: 248 DRWHXVXNXERGIKRXLIPSATNYQEXFNLNSMMQAEQXIFHLIYNN 388
           DR   V +   G+++ +IP   N +    L     ++   F+L YN+
Sbjct: 151 DRGKFVDDPPTGLEKAVIPPGKNVRSALGLKEQGISQHFYFYLCYND 197


>At1g04180.1 68414.m00408 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenases YUCCA [gi:16555352],
           YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from
           Arabidopsis thaliana; contains Pfam profile PF00743
          Length = 421

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -3

Query: 331 KXLLVIGCAWN*XSLDTSFXISNXMPAIVIXN*LSSSSK--MGKTIFDIXKRLMRWL 167
           K +LV+GC  +   +       N + ++V+ + +    +  MGK+ F I   +M+WL
Sbjct: 190 KRVLVVGCGNSGMEVSLDLANHNAITSMVVRSSVHVLPREIMGKSTFGISVMMMKWL 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,940,945
Number of Sequences: 28952
Number of extensions: 159065
Number of successful extensions: 305
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)