Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120779.seq
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces... 28 1.0
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|... 28 1.0
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 27 1.8
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 27 2.3
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 27 2.3
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.1
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom... 27 3.1
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 3.1
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 26 4.1
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 5.4
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 5.4
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 5.4
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 26 5.4
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy... 25 7.2
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 7.2
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.2
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom... 25 9.5
>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -1
Query: 192 GFLDLFI-AVYNFGDRSNFVAFDTFHF-YTLIYNIC 91
GF+ + I A+ F DRS VAF +F + L+Y IC
Sbjct: 120 GFIPVLIKAMKQFKDRSENVAFTSFRYALFLVYYIC 155
>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 28.3 bits (60), Expect = 1.0
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 324 IFRNKADTRQIAAVVFSTLAFIHNRFHPLV---TNFTNKMEFVVTETNDTS 467
IFR + R V AFI N++ PLV T++TN V +TN S
Sbjct: 93 IFRFNLNHRGYLEVKSGFRAFIENKYSPLVFHATSWTNGFSIDVQKTNPIS 143
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 223 LSSLESYETLKLNWRSANTWLCSAPWK*PSRCWK 324
+++ +S + L + RS T S WK PS+ WK
Sbjct: 139 VAAADSNDYLTITGRSGRTLKLSKEWKNPSKKWK 172
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +1
Query: 139 KVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKLNWRSANTWLCSAPWK*PSRC 318
++ V + V +EK ++ ++AE DLK ++ Y ++ R A TW S K S+
Sbjct: 649 ELEPVVQKVLDEEKQERELKIAERDLKKGENIMKYGD-EIRSRPARTWFQSEKDKQASKA 707
Query: 319 WKYLETKQTLGK 354
+ K++L K
Sbjct: 708 -SEAKDKKSLAK 718
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 193 YELAEFDLKNLSSLESYETLKLNWRSANTWLCS 291
Y++ EF N S + Y L LNWR+ +LC+
Sbjct: 443 YDIDEF--YNPSGIYRYNKLGLNWRALIAFLCA 473
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 26.6 bits (56), Expect = 3.1
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 19/135 (14%)
Frame = -3
Query: 571 SVSNSRLSILTIDGLSTEPQQTPSFSVNKM---GSPGMLVSLVSVTTN--SILLVKLVTS 407
SV + I + GLS QQ ++S +++ G+P +S VSVT N ++ + T+
Sbjct: 185 SVVSVNSEIFSYFGLS---QQYVNYSTSRLCVVGTPRANMSTVSVTNNGSAVSNYTVNTN 241
Query: 406 GW---NLLCIKANVLN-------TTAAICRVSAL----FLNISNSGWVISRVLSIAMYLL 269
GW N C+ V N T A + VS L N + S + ++ S +Y
Sbjct: 242 GWTSSNFKCVDDVVANIFGLDFYTAAVLSEVSILRSFALCNATTSSSLFRQIASYGVYGS 301
Query: 268 SANLISEFHSFLNCL 224
SE SF N +
Sbjct: 302 FHFSSSESGSFANLI 316
>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 283 AMYLLSANLISEFHSFLNCLDFLNQIRPIRR 191
A+Y+ +A++ SEF FLN L + I+ + +
Sbjct: 53 ALYVQNADIHSEFEEFLNKLQYKIPIKSVNK 83
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 473 GNACVISFSDHKLHFVSKISNK 408
G+AC +S + K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -3
Query: 316 SGWVISRVLSIAMYLLSANLISEFHSFLNCLDFLNQIRPIRRFFGSF 176
SGW+ R +S A++ S+ S + LN F+N + + +G +
Sbjct: 630 SGWIAYRAISDAIHNASSTSSSYTSALLNSNVFINIVISLSSTYGMY 676
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 476 SGNACVISFSDHKLHFVSKISNKW 405
SGN +S D+K++ + NKW
Sbjct: 266 SGNILAVSCGDNKVYLFKESQNKW 289
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 256 ISEFHSFLNCLDFLNQIRPIRRFFGSFHRCLQ-FR*PFE 143
IS H F++CL F+N +F + R LQ FR P E
Sbjct: 771 ISVMHEFIDCLSFIN-----LKFVDALRRLLQCFRLPGE 804
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 437 LHFVSKISN-KWMESIVYKS*CAKHHGGNLPSVCFVSKYFQQRLGHFQGAEHSHVF 273
L +++ +S+ KW+E + K C K+ N S K F + +G+ A + +
Sbjct: 157 LQYITGVSDTKWLEFVSAKGQCPKYLYWNNKSYLLKKKRFLKEVGNSPSAVYCRYY 212
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = -3
Query: 454 VSVTTNSILLVKLVTSGWNLLCIKANVLNTTAAICRVSALFLN 326
+S+ TNS L VKL ++ + C+ + + ++ ++ ++ L L+
Sbjct: 905 ISMQTNSSLSVKLNSNSNTITCVVSGTMVSSPSLANITILGLS 947
>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 410
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 436 SILLVKLVTSGWNLLCIKANV 374
S +L L+ GW ++C ANV
Sbjct: 19 SCILAWLIEEGWEVICYMANV 39
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +1
Query: 1 RHEYTSKRDRFYESFKRYHAS*SLYEHASKANVVDKCIKMKRVKC 135
+H+ + ++ +YE +R+ + S YE A + I M +++C
Sbjct: 1289 QHDKMNLKETWYEKLQRWEDALSAYEKREAAGAGNFEITMGKLRC 1333
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/63 (25%), Positives = 26/63 (41%)
Frame = +3
Query: 315 LLEIFRNKADTRQIAAVVFSTLAFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFT 494
+LEI D + ++VFST R++ LV ++ + E D IL
Sbjct: 292 ILEILTVHCDLEESFSIVFSTQPRFIARYNELVQAVSSSSNSEIDEVEDAETIDSKILEK 351
Query: 495 ENE 503
N+
Sbjct: 352 RND 354
>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 453
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 349 RVSALFLNISNSGWVISRVLSIAMYLLSANLISEFHSFLNCLDFLN 212
R++ F N + + I + I Y ++ SEF N +DFLN
Sbjct: 234 RLNPYFSNYNLTNDDILNLYGICSYEIALQDYSEFCKLFNSVDFLN 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,998
Number of Sequences: 5004
Number of extensions: 56778
Number of successful extensions: 182
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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