Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120779.seq
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0757 + 24267599-24268882                                         29   3.2  
06_01_0993 + 7710016-7710977,7711081-7711316,7711422-7711501,771...    29   3.2  
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851...    28   5.6  
07_03_1752 - 29218348-29218524,29218593-29218736,29218957-292191...    28   5.6  
10_07_0161 - 13674631-13675433,13675793-13675862                       28   7.4  
09_06_0341 + 22406709-22407860                                         27   9.8  
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554...    27   9.8  

>06_03_0757 + 24267599-24268882
          Length = 427

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 259 NWRSANTWLCSAPWK*PSRCWK 324
           +WR A  W+C  PW    + W+
Sbjct: 348 SWRPAGPWVCFNPWPAQQQAWR 369


>06_01_0993 +
           7710016-7710977,7711081-7711316,7711422-7711501,
           7711977-7712072,7712995-7713892,7713983-7714093,
           7714657-7714751
          Length = 825

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
 Frame = -3

Query: 568 VSNSRLSILTIDGLSTEPQQTPSFSVNKMGSPGMLVSLVSVTTNSILLVKLVTSGWNLLC 389
           +SNSR++I +  G ++   Q PS    K G     V  +++      +  + +  ++  C
Sbjct: 481 ISNSRININSASGRASNDSQAPSVQPQKCGPVDSTVVSMALKREQFSIPSMCSESFSSHC 540

Query: 388 IKAN----VLNTTAAICRVSALFLNISNSGWVISRVLSIAMYLLSANLISEFHS 239
            K+      +     + R + +  +++    V   V S    LLS N  SE H+
Sbjct: 541 TKSQDSVVRMRPDDTLVRRALISDSVNGCDSVGPTVESHCHSLLSQNFDSEGHA 594


>09_02_0393 +
           8510089-8510274,8510450-8510806,8510889-8511011,
           8511209-8511523,8511576-8511682,8512559-8512629,
           8512952-8513029,8513390-8513454,8514224-8514274,
           8514373-8514414,8514785-8515105,8515154-8517880
          Length = 1480

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 229 SLESYETLKLNWRSANTWLCSAPW 300
           + E Y T KL+W + + W C   W
Sbjct: 118 NFEQYMTCKLDWINVDAWKCFCHW 141


>07_03_1752 -
           29218348-29218524,29218593-29218736,29218957-29219148,
           29219225-29219440,29219873-29220010,29220137-29220232,
           29221204-29221357,29221976-29222098,29222291-29222418,
           29222669-29222773,29223396-29223437,29223631-29223746,
           29223805-29223916
          Length = 580

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +3

Query: 354 IAAVVFSTLAFIHNRFHPLVTNFTNKMEFVVTETN---DTSIPGEPILFTENEGVCCGSV 524
           I A+V     F HN F+P++    +    V+   N   DT IP    L  ++  + C  V
Sbjct: 230 IGAIVSWNYPF-HNVFNPMLAAIFSGNAAVIKIMNRASDTLIPVTLELGGKDAFIVCEDV 288

Query: 525 DRPSIVKMLSR 557
           D PS+V++  R
Sbjct: 289 DLPSVVQVAVR 299


>10_07_0161 - 13674631-13675433,13675793-13675862
          Length = 290

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 259 NWRSANTWLCSAPWK*PSRCWK 324
           +WR A  W+C  PW      W+
Sbjct: 229 SWRPAGPWVCFNPWPAQQLAWR 250


>09_06_0341 + 22406709-22407860
          Length = 383

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 115 KMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYE 246
           +MK V       + E+  +D  +++  EL+  DLKNL+ +ES E
Sbjct: 310 RMKCVAVASKHPIYELNAADLVVKQLDELSVVDLKNLADIESPE 353


>05_06_0014 +
           24854462-24854570,24854958-24855065,24855240-24855432,
           24855892-24856150,24856236-24856292,24856370-24856417,
           24856725-24856811,24856885-24856942,24857084-24857151,
           24857279-24857374,24857483-24857539,24857906-24857952,
           24858184-24858210,24858312-24858504
          Length = 468

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 390 HNRFHPLVTNFTNKMEFVVTETNDTSIPG 476
           H  FH  + + TNK+E V++ T  + I G
Sbjct: 427 HRLFHHPIDDCTNKIEHVISRTEQSFISG 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,367,402
Number of Sequences: 37544
Number of extensions: 345484
Number of successful extensions: 883
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)