Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120779.seq
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56295| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_16898| Best HMM Match : IncA (HMM E-Value=0.36)                     32   0.35 
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_16709| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_56295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 199 LAEFDLKNLSSLESYETLKLNWRSANTWLCSAPWK 303
           LA FDL +LS   S   +K+ +   NTW C  P K
Sbjct: 182 LANFDLHSLSERRSASCIKVFYCPRNTWACITPGK 216


>SB_16898| Best HMM Match : IncA (HMM E-Value=0.36)
          Length = 466

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +1

Query: 82  ASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKLN 261
           + K +  D+   M + K N +R +      D KI       EF L  L+ ++ +E LKL 
Sbjct: 347 SQKVSKHDQTAAMAKAKVNSIRDLVSKALKDNKISDE----EFSLI-LNEVDKFEALKLQ 401

Query: 262 WRSANTWLC 288
            R  + W C
Sbjct: 402 IRQKSNWKC 410


>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = -3

Query: 562 NSRLSI-LTIDGLSTEPQQTPSFSVN-KMGSPGMLVSLVSVTTNSILLVKLV 413
           N+ L I LT++ L  +  +T + S    +G   ++VS+ SVTTNS++LV ++
Sbjct: 753 NNSLEIKLTVNILQNQGSRTMTSSYYLAIGILSIIVSITSVTTNSLILVVII 804


>SB_16709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 247 TLKLNWRSANTWLCSAP-WK*PS--RCWKYLETKQTLGKL 357
           TLK   +  N W  + P W+  S  +C+K+L+TK+ L  L
Sbjct: 47  TLKRRQKKNNDWQITDPRWRTKSANKCYKFLQTKKDLSIL 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,316,380
Number of Sequences: 59808
Number of extensions: 414449
Number of successful extensions: 1025
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)