Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120779.seq
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106575-4|AAC78172.2|  548|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z22176-11|CAA80141.1|  784|Caenorhabditis elegans Hypothetical p...    29   2.9  
U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical ...    28   6.6  

>AF106575-4|AAC78172.2|  548|Caenorhabditis elegans Hypothetical
           protein K04F1.13 protein.
          Length = 548

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 160 IVNSDEKIQKTYELAEFDLKNLSSLESYETLKLNW 264
           ++ S +KI+  +E+    L++LS LE+ ET+  NW
Sbjct: 215 VLTSLKKIEGVFEVYNTSLQDLSFLENLETISGNW 249


>Z22176-11|CAA80141.1|  784|Caenorhabditis elegans Hypothetical
           protein ZK1098.3 protein.
          Length = 784

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +1

Query: 16  SKRDRFYESFKRYHAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTY 195
           SK   + E+ K   A+  + +H    +   + I +  + C+KV+ V E++   +K+QK+Y
Sbjct: 168 SKVQEYLENQKFKEAAEIVMKHEVVDDYSFEQITLPLILCDKVQIVDELLKISKKLQKSY 227


>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 25  DRFYESFKRYHAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSD-EKIQKTYEL 201
           DRF ++   +        HA     +   +    V+C   RTVT IVN+D  K+ K + L
Sbjct: 11  DRFSDTDSEHIPRNLTCGHALCHKCITAMVNNSTVECPFCRTVTNIVNNDITKLLKNFAL 70

Query: 202 AE 207
            E
Sbjct: 71  IE 72


>Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 127 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 246
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196


>Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical
           protein F02E9.9a protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 127 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 246
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 120 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 158


>Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 127 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 246
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196


>Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical
           protein W09D12.1 protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 556 RLSILTIDGLSTEPQQTPSFSVNKMGSPGMLVSLVSVTTNSILLVK 419
           RL+I  I GLS+    TPS  V++   P  L S+V++     L  +
Sbjct: 260 RLAIRKIYGLSSVDHSTPSSDVDRSKCPKHLDSVVAINDQEWLFFR 305


>AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical
           protein K06A5.8a protein.
          Length = 874

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 232 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 131
           N LDF+  ++P+  F FG+F   +     FEL C+
Sbjct: 80  NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114


>AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical
           protein K06A5.8b protein.
          Length = 942

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 232 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 131
           N LDF+  ++P+  F FG+F   +     FEL C+
Sbjct: 80  NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,111,423
Number of Sequences: 27780
Number of extensions: 315033
Number of successful extensions: 994
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)