Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120779.seq
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.1  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   1.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   1.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.8  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   7.8  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 538 IDGLSTEPQQT-PSFSVNKMGSPGMLVSLVSVTTN 437
           +D +  E + T P ++V ++  PG+ ++ + +TTN
Sbjct: 408 VDDVFQEHKNTLPQYTVQQLDFPGIEIADIKLTTN 442


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +3

Query: 213 FKKSKQFRKL*NSEIKLALSKYMAMLSTLEMTQPLLEI 326
           F   K+++K  N  ++ +++KY+  L  +E T+P+L I
Sbjct: 88  FYLGKEWKK--NLNLRDSVTKYLIHLKEIEDTEPILLI 123


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 174 IAVYNFGDRSNFVAFDTF 121
           I ++ F D SNF+A +TF
Sbjct: 177 INIHLFHDASNFIAMETF 194


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 493 QKTRGSVVAPSTDRLSLKC*AASLTP 570
           +K + SV  PST+ L+ KC     TP
Sbjct: 337 EKIKISVSYPSTETLNTKCNTLERTP 362


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/30 (23%), Positives = 20/30 (66%)
 Frame = +1

Query: 178 KIQKTYELAEFDLKNLSSLESYETLKLNWR 267
           +I+KT + A F  ++  + + +E+++ +W+
Sbjct: 511 EIEKTIDDARFIAQHAKNKDKFESVEEDWK 540


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +3

Query: 387 IHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILF 491
           +   +   +  +T K+EFVV +      P  P +F
Sbjct: 387 LETEWSSFINPWTKKLEFVVGQHRILKGPANPDIF 421


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +3

Query: 387 IHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILF 491
           +   +   +  +T K+EFVV +      P  P +F
Sbjct: 93  LETEWSSFINPWTKKLEFVVGQHRILKGPANPDIF 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,193
Number of Sequences: 438
Number of extensions: 3992
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)