Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120779.seq
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family...    33   0.22 
At4g11100.1 68417.m01802 expressed protein                             29   2.7  
At2g37930.1 68415.m04656 expressed protein                             27   8.2  

>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
           protein similar to SP|Q28141 ATP-dependent RNA helicase
           A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
           taurus}; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1015

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 524 DGATTDPLVFCKQNGFSGNACVISFSDHKLHFVSKISNKW 405
           DG++T PL+        G  C++ F D  +HF S I+N++
Sbjct: 799 DGSSTSPLLDLFPTSSEG--CILVFDDSDMHFTSSIANRY 836


>At4g11100.1 68417.m01802 expressed protein
          Length = 287

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +1

Query: 34  YESFKRYHAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFD 213
           YE+ K +H + +     S   ++++C+K +R K  KVR   E +    + ++T  + E  
Sbjct: 41  YEAIKLHHENKAKELEVSNKRLLEECMKERREKA-KVRKTFEEMKKTMESERTAIVDELK 99

Query: 214 LKN 222
            KN
Sbjct: 100 SKN 102


>At2g37930.1 68415.m04656 expressed protein
          Length = 467

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 390 HNRFHPLVTNFTNKMEFVVTETNDTSI-PGEPILF 491
           H   HP V     +M+ V T T+D+SI   E +LF
Sbjct: 270 HKNEHPFVHTIIGEMKTVTTFTSDSSIHKSETVLF 304


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,196,740
Number of Sequences: 28952
Number of extensions: 288773
Number of successful extensions: 771
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)