Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120778.seq
         (638 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    27   0.100
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   8.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   8.7  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 0.100
 Identities = 18/77 (23%), Positives = 32/77 (41%)
 Frame = -3

Query: 255 PSRKNIEKMFFTLCMLSVLLA*FSKLLFMETIHLLNSLKKVRPLPSTIKLWLKYFENKKH 76
           P ++  E+  FT   L +L   F+K  + +         K+    S +++W K    K  
Sbjct: 124 PRKQRRERTTFTRAQLDLLEGLFAKTRYPDIFMREEVAVKINLPESRVQVWFKNRRAKCR 183

Query: 75  NESISSRNNCASKHTFS 25
            +    +N  AS+ T S
Sbjct: 184 QQLQQQQNKSASRTTTS 200


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -1

Query: 524 VFVIGRSNTYNMRGMPNMGLKKMSQPFCKPSSRVLSEDAKYLH 396
           VF I  + T N+R + +    + ++    P    +S D  YL+
Sbjct: 457 VFAIREAATLNLRKLVDQFGAEWAETTIIPKVLAMSRDQNYLY 499


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 165 TIHLLNSLKKVRPLPSTIKL 106
           + H L SLKKV    +TI++
Sbjct: 61  SFHFLRSLKKVHLQDNTIEM 80


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,180
Number of Sequences: 336
Number of extensions: 3582
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)