Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120778.seq
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 28 0.99
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 28 1.3
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 1.3
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 28 1.3
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 1.7
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.3
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ... 27 3.0
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 4.0
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo... 26 5.3
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom... 26 5.3
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.0
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 25 9.2
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 9.2
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom... 25 9.2
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 25 9.2
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 28.3 bits (60), Expect = 0.99
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 32 VCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFKEFNKCIVSIKSSFENQANNTDN 211
+ F R ++SLCFLF NQ D L FK N+ ++++ + +T+N
Sbjct: 341 ITFMGDFKRCVVESLCFLFLLLTNQPRFTD--ELVNFKSSNEMMMNLLFIHVKYSGDTEN 398
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +2
Query: 59 DEID--SLCFLFSKYFNQSLIVDGKGLTF 139
DEID SLC L K+F + V G+GL F
Sbjct: 210 DEIDGISLCNLVHKFFVDACTVPGEGLCF 238
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 65 IDSLCFLFSKYFNQSLIVDGKGLTFFKEF 151
I+SLC LF+K+ N + + + +TF +F
Sbjct: 698 INSLCKLFTKFSNFDYLFEDRTVTFLTDF 726
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 32 VCFE-AQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFKEFNKCIVSIKSSFENQANNTD 208
V FE Q L DE+ + FL + ++ VD T +E K + ++ F NQANN D
Sbjct: 132 VSFEQGQALADEL-GVKFLEASA-KTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNVD 189
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 346 MCQSCKPANKIQCFECKC-RYLASSLSTLDEGLQNGWDIF 462
+C+S +K QC+ C+C R + ++L + W IF
Sbjct: 407 ICRSRSCPSKYQCYSCRCARNSSLEFTSLPGQSSDTWSIF 446
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 188 NQANNTDNIHNVKNIFSIFLRDGSS 262
++A+NT ++ ++N+FS +R G S
Sbjct: 477 SRADNTSSLQGIRNVFSYLVRPGYS 501
>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -3
Query: 303 LQVLHNGPKLGH-LFDEPSRKNIEKM 229
L+VL NG K+G LFDE KN+E M
Sbjct: 242 LKVL-NGMKIGDSLFDEAGSKNVESM 266
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 316 PTPAPDVDEIMCQSCKPANKI 378
P P P VD C+SC P+ ++
Sbjct: 582 PVPRPRVDLTQCKSCGPSYRL 602
>SPBC16A3.06 |||tRNA specific adenosine deaminase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -3
Query: 360 ARLTHDLVHVGCRRRIVICLQVLHNGPKLGHLFDEPSRKNIEKMFFTLCMLSVL 199
A T+ L+ +G + + C QV+HNG K G K++EK +C S++
Sbjct: 292 ATSTNVLIWIGDKMQ---CTQVIHNGIKAG-----TKAKDVEKSQTLICRKSMM 337
>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +3
Query: 507 STDYKNXSERY*RKQFDYTDIC---GNFSIT*FATKRILCTQKRR 632
+ DY + + Q YT++C S+ FATK I CT RR
Sbjct: 114 TVDYIMDLRKRTKNQLIYTEVCDLSSMLSVRKFATKWIDCTPIRR 158
>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 85
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 591 KL*KNCHKYLCNQIVFVNNVHXRFCNRSKQHVQH-ERHAKHG 469
KL K+CH L +++V + RFC S H++ + H HG
Sbjct: 3 KLVKHCHTSLHSELVILFYAKNRFC-ISIDHLRPLKSHRTHG 43
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 579 NCHKYLCNQIVFVNNVHXRFCNRSKQHVQHER 484
N H+Y CN VN V + S ++VQ +R
Sbjct: 272 NGHRYRCNSCGIVNEVPQSYDWDSFRNVQRDR 303
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 364 PANKIQCFECKCRYLASSLS 423
P I CFE C Y+ +LS
Sbjct: 520 PRRLISCFEAPCSYIIGTLS 539
>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 25.0 bits (52), Expect = 9.2
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +2
Query: 68 DSLCFLFSKYFNQSLIVDGKGLTFFKEFNKCIVSIKSSFENQANNTDN 211
D + L S F+ V+ ++ NK K FEN+ N+T N
Sbjct: 150 DQISSLRSGLFSNQREVESLEQLVHEQLNKLNTESKMEFENRKNDTKN 197
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 375 FVCGLARLTHDLVHVGCRRRIVICLQVLHNGPKLGHLFDE 256
F G R T D+V ++ C ++H +G+L+DE
Sbjct: 146 FSSGSGRNTTDIVLFPFVLAVIKCCDIVHREFLMGNLYDE 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,068
Number of Sequences: 5004
Number of extensions: 57743
Number of successful extensions: 180
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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