Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120778.seq
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0413 + 8815443-8816001,8816096-8816628,8819389-8819679 31 1.0
01_06_1190 + 35248783-35248835,35249218-35249550,35251288-352515... 29 4.1
06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047 28 5.4
05_02_0055 + 6185448-6185473,6186336-6186678,6187374-6187523,618... 28 5.4
06_01_0096 - 794148-794246,795682-796975,798960-799417 28 7.2
01_01_0155 - 1362710-1363267 28 7.2
09_06_0056 - 20561645-20561920,20562024-20562611,20562698-205630... 27 9.5
04_03_0396 + 15361501-15361663,15361726-15361806,15361909-15362054 27 9.5
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243... 27 9.5
02_05_0948 - 33003921-33006269 27 9.5
>09_02_0413 + 8815443-8816001,8816096-8816628,8819389-8819679
Length = 460
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 551 LFSLITFTXVFVI--GRSNTYNMRGMPNMGLKKMSQPF 444
L + ITF F + G SN G+PNMG K Q F
Sbjct: 418 LLATITFAAAFTLPGGHSNNAGSEGLPNMGRKLAFQAF 455
>01_06_1190 +
35248783-35248835,35249218-35249550,35251288-35251588,
35251680-35252120
Length = 375
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -3
Query: 336 HVGCRRRIVICLQVLHNGPKLGHLFDEPSRKNIEKMFFTLCMLSVL 199
H GC+R+++ + LHNG + ++ + +TL + VL
Sbjct: 18 HCGCKRKLIPIILYLHNGRLVIGSVEDALEHELANRLYTLARVLVL 63
>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
Length = 396
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 305 HITIRRRHPTWTRSCVSRASPQT 373
+I RRRH T+T SC R SP +
Sbjct: 21 YIPPRRRHGTFTSSCAFRLSPSS 43
>05_02_0055 +
6185448-6185473,6186336-6186678,6187374-6187523,
6187640-6187906,6189187-6189276,6189802-6190136,
6190777-6190864
Length = 432
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 423 HPRRGLAKWLGHFFKTHVWHASHVV 497
HPR + KW G F++H+W + VV
Sbjct: 3 HPR--VTKWYGKVFRSHLWGSPAVV 25
>06_01_0096 - 794148-794246,795682-796975,798960-799417
Length = 616
Score = 27.9 bits (59), Expect = 7.2
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 453 GHFFKTHVWHASHVVRVA 506
G +FK+H W A+H++ +A
Sbjct: 447 GFYFKSHRWRAAHIIVIA 464
>01_01_0155 - 1362710-1363267
Length = 185
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 424 CSARTPSICICTRNIEFCLRAC 359
CS P IC C +E C AC
Sbjct: 126 CSRSLPPICRCADEVESCAAAC 147
>09_06_0056 -
20561645-20561920,20562024-20562611,20562698-20563055,
20563149-20563483,20563593-20563633,20563722-20563932,
20564289-20564348,20564432-20564457,20565066-20565264
Length = 697
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 547 NNLITQIFVAIFL*LDLRQSVFFVHKNGGH 636
+ ++ + V +FL + L S+FFV +NGGH
Sbjct: 31 SGVVAPLVVLVFLFV-LAPSIFFVARNGGH 59
>04_03_0396 + 15361501-15361663,15361726-15361806,15361909-15362054
Length = 129
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 227 NIFSIFLRDGSSNKCPNLGPLCNTCKHI 310
NI+++ +GSSNK P+LG C +H+
Sbjct: 64 NIYNLQEGEGSSNKMPHLG--CRKIQHV 89
>03_01_0309 -
2432395-2433271,2433494-2434495,2434538-2435073,
2435579-2435716,2436050-2436148,2436278-2436346,
2436968-2437063
Length = 938
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 21 ASKTCVLKRNCYEMKSIRCVFYFQNISTKA*SWTVKVLLF 140
A K+ + C E+ + C+ F + +KA SW V+ LL+
Sbjct: 27 AIKSSEVALKCSELDTTNCLGPFLTLGSKAGSWCVRHLLW 66
>02_05_0948 - 33003921-33006269
Length = 782
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +2
Query: 164 VSIKSSFENQANNTDNIHNVKNI-FSIFLRDGSSNKCPNLGPLCNTCKHITIRRRHPTWT 340
V+I +++ ++ TD + + + F+I G+S CP++ L +R+ P W+
Sbjct: 523 VNILAAWTGESAPTDLDIDPRRVEFNII--SGTSMSCPHVSGLA-----ALLRQAQPDWS 575
Query: 341 RSCVSRASPQTKFNVSSANA 400
+ + A T +NV +++A
Sbjct: 576 PAAIKSALMTTAYNVDNSSA 595
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,663,153
Number of Sequences: 37544
Number of extensions: 343022
Number of successful extensions: 958
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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