Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120778.seq
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46730| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)         29   4.2  
SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)                   28   5.6  
SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46)               28   5.6  
SB_53270| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_36078| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-27)          27   9.7  
SB_25586| Best HMM Match : RVT_1 (HMM E-Value=2.3e-18)                 27   9.7  
SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08)                   27   9.7  
SB_24499| Best HMM Match : Fibrinogen_C (HMM E-Value=0.00053)          27   9.7  
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_46730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 173 KSSFENQANNTDNI--HNVKNIFSIFLRDGSSNKCPNLGPLCNTCKHITIRRRHPT 334
           K S EN+  N +    +NV +  SIF ++ S  KC  +  +C   ++ +I++   T
Sbjct: 193 KKSLENKKTNKEAYFENNVFSKESIFRKEESGRKCQQIPEVCTMGQNFSIQKYFET 248


>SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)
          Length = 647

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 263 NKCPNLGPLCNTCKHITIRR 322
           NK PNLG LC TC+    +R
Sbjct: 470 NKAPNLGGLCRTCEIFGAKR 489


>SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1457

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 188  NQANNTDNIHNVKNIFSIFLRDGSSN 265
            N  NNTDNI+N+ NI +I   D   N
Sbjct: 1375 NNINNTDNINNIDNIDNIDNIDNIDN 1400


>SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46)
          Length = 521

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -1

Query: 599 RKSSYRKIATNICVIKLFSLITFTXVFVIGRSNTYNMRGMPNMGLKKMSQPFCKPSSRVL 420
           RKS  R ++  +C I     +TF  +     S +YN     + G  K  + FC+ S  VL
Sbjct: 85  RKSVKRLLSDELCGIAFHKPLTFHAL-----SGSYNTGSFASKGKPKYWKAFCEASEEVL 139

Query: 419 S 417
           +
Sbjct: 140 A 140


>SB_53270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -3

Query: 315 IVICLQVLHNGPKLGHLFDEPS-RKNIEKMFFTLCMLSVLLA*FSKLLFMETIHLLNSLK 139
           I++ L V  NG  +  ++   S R+NI      +C+  +LLA F+ +  +E + +  SLK
Sbjct: 40  IIVLLAVSLNGIIIYTVYKNKSMRRNINFFIVNMCVSDILLAIFNNVGILEPL-ITRSLK 98


>SB_36078| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-27)
          Length = 611

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = -3

Query: 114 IKLWLKYFENKKHNESISSR-----NNCASKHTFSKR 19
           IKLWLK   N  +NE +S +     +NC +K+ + ++
Sbjct: 189 IKLWLKLSNNNGNNEKLSRKAFATISNCENKNFWHRK 225


>SB_25586| Best HMM Match : RVT_1 (HMM E-Value=2.3e-18)
          Length = 802

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +2

Query: 260 SNKCPNLGPLCNTCKHITIRRRHPTWTRSCVSRASPQTKFNVSSANADTWRP 415
           S KCP L  +CN C+    ++ H  + + C  +A P  K  VS+A   TW P
Sbjct: 115 STKCPALEAICNKCQ----KKGH--FAKVCKGKAVP--KERVSAA---TWSP 155


>SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08)
          Length = 690

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 313 NPTPAPDVDEIMCQSCKPANKIQCFECKCRY 405
           NP   P   +++C+ C+    +QC +C+  Y
Sbjct: 5   NPLANPKGVKLVCELCQKPAFVQCTDCRVTY 35


>SB_24499| Best HMM Match : Fibrinogen_C (HMM E-Value=0.00053)
          Length = 274

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 292 QYLQTYYNPTPAPDVDEIMCQS-CKPANKIQCFECKCR 402
           +Y+Q   NP    D D  M +S C P +    ++C CR
Sbjct: 8   EYIQWLKNPC---DPDHCMYESQCNPVSNADIYQCNCR 42


>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 282 DHYAILANILQSDAGTRRGRDHVSVVQ-ARKQNSMFRVQMQILGVLAEHPR 431
           + Y   + I +SD G  RGR  VS+ Q  R    +    M  LG   EH R
Sbjct: 135 EFYMDKSGICESDIGRIRGRQTVSLGQGCRNPGHVTHELMHTLGFYHEHTR 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,221,721
Number of Sequences: 59808
Number of extensions: 435822
Number of successful extensions: 1342
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)