Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120778.seq
         (638 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT015203-1|AAT94432.1|  841|Drosophila melanogaster RE65032p pro...    32   0.57 
BT004902-1|AAO47880.1|  746|Drosophila melanogaster LD08432p pro...    31   1.3  
AE014297-2133|AAF55262.2|  746|Drosophila melanogaster CG10278-P...    31   1.3  
AB124838-1|BAD00020.1|  746|Drosophila melanogaster transcriptio...    31   1.3  
AB054996-1|BAB21551.1|  571|Drosophila melanogaster dGATAe protein.    31   1.3  
AB054995-1|BAB21550.1|  704|Drosophila melanogaster GATA factor ...    31   1.3  
M95811-1|AAD19752.1| 1788|Drosophila melanogaster laminin B1 cha...    30   2.3  
M19525-1|AAA28663.1| 1788|Drosophila melanogaster protein ( D.me...    30   2.3  
BT015222-1|AAT94451.1| 1296|Drosophila melanogaster RE35801p pro...    28   9.3  
AE014134-1348|AAN10647.1| 1788|Drosophila melanogaster CG7123-PB...    28   9.3  
AE014134-1347|AAF52563.1| 1788|Drosophila melanogaster CG7123-PA...    28   9.3  

>BT015203-1|AAT94432.1|  841|Drosophila melanogaster RE65032p
           protein.
          Length = 841

 Score = 32.3 bits (70), Expect = 0.57
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 370 NKIQCFECKCRYLASSLSTLDEGLQNGWDIFLRP 471
           N+ Q  +C CR  A  +S+ +   QN W I LRP
Sbjct: 1   NRYQDVQCVCRLSAIDISSANRYFQNNWLISLRP 34


>BT004902-1|AAO47880.1|  746|Drosophila melanogaster LD08432p
           protein.
          Length = 746

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 21/80 (26%), Positives = 30/80 (37%)
 Frame = +2

Query: 224 KNIFSIFLRDGSSNKCPNLGPLCNTCKHITIRRRHPTWTRSCVSRASPQTKFNVSSANAD 403
           +N    FLR GS   CPN          IT R+  P    +  +R +  T  N  + +  
Sbjct: 489 ENCHGPFLRKGSEYFCPNCPAFMRMAPRITQRQAKPKAAAAPNNRRNGVTCANCQTNSTT 548

Query: 404 TWRPR*APSTRACKMVGTFF 463
            WR R       C   G ++
Sbjct: 549 LWR-RNNEGNPVCNACGLYY 567


>AE014297-2133|AAF55262.2|  746|Drosophila melanogaster CG10278-PA
           protein.
          Length = 746

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 21/80 (26%), Positives = 30/80 (37%)
 Frame = +2

Query: 224 KNIFSIFLRDGSSNKCPNLGPLCNTCKHITIRRRHPTWTRSCVSRASPQTKFNVSSANAD 403
           +N    FLR GS   CPN          IT R+  P    +  +R +  T  N  + +  
Sbjct: 489 ENCHGPFLRKGSEYFCPNCPAFMRMAPRITQRQAKPKAAAAPNNRRNGVTCANCQTNSTT 548

Query: 404 TWRPR*APSTRACKMVGTFF 463
            WR R       C   G ++
Sbjct: 549 LWR-RNNEGNPVCNACGLYY 567


>AB124838-1|BAD00020.1|  746|Drosophila melanogaster transcription
           factor dGATAe protein.
          Length = 746

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 21/80 (26%), Positives = 30/80 (37%)
 Frame = +2

Query: 224 KNIFSIFLRDGSSNKCPNLGPLCNTCKHITIRRRHPTWTRSCVSRASPQTKFNVSSANAD 403
           +N    FLR GS   CPN          IT R+  P    +  +R +  T  N  + +  
Sbjct: 489 ENCHGPFLRKGSEYFCPNCPAFMRMAPRITQRQAKPKAAAAPNNRRNGVTCANCQTNSTT 548

Query: 404 TWRPR*APSTRACKMVGTFF 463
            WR R       C   G ++
Sbjct: 549 LWR-RNNEGNPVCNACGLYY 567


>AB054996-1|BAB21551.1|  571|Drosophila melanogaster dGATAe protein.
          Length = 571

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 21/80 (26%), Positives = 30/80 (37%)
 Frame = +2

Query: 224 KNIFSIFLRDGSSNKCPNLGPLCNTCKHITIRRRHPTWTRSCVSRASPQTKFNVSSANAD 403
           +N    FLR GS   CPN          IT R+  P    +  +R +  T  N  + +  
Sbjct: 489 ENCHGPFLRKGSEYFCPNCPAFMRMAPRITQRQAKPKAAAAPNNRRNGVTCANCQTNSTT 548

Query: 404 TWRPR*APSTRACKMVGTFF 463
            WR R       C   G ++
Sbjct: 549 LWR-RNNEGNPVCNACGLYY 567


>AB054995-1|BAB21550.1|  704|Drosophila melanogaster GATA factor e
           protein.
          Length = 704

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 21/80 (26%), Positives = 30/80 (37%)
 Frame = +2

Query: 224 KNIFSIFLRDGSSNKCPNLGPLCNTCKHITIRRRHPTWTRSCVSRASPQTKFNVSSANAD 403
           +N    FLR GS   CPN          IT R+  P    +  +R +  T  N  + +  
Sbjct: 447 ENCHGPFLRKGSEYFCPNCPAFMRMAPRITQRQAKPKAAAAPNNRRNGVTCANCQTNSTT 506

Query: 404 TWRPR*APSTRACKMVGTFF 463
            WR R       C   G ++
Sbjct: 507 LWR-RNNEGNPVCNACGLYY 525


>M95811-1|AAD19752.1| 1788|Drosophila melanogaster laminin B1 chain
           protein.
          Length = 1788

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 143 KEFNKCIVSIKSSFENQANNTD-NIHNVKNIFSIFLRDGSSN-KCPNLGPLCNTCK 304
           K++ K   + KSS  +   N D    N+ NI S+F+ DG+S   C   G L   C+
Sbjct: 751 KDYEK--YNCKSSLYDMNYNADPKCQNLDNILSVFVHDGASMCNCNPTGSLSKVCE 804


>M19525-1|AAA28663.1| 1788|Drosophila melanogaster protein (
           D.melanogaster lamininB1 subunit mRNA, complete cds. ).
          Length = 1788

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 143 KEFNKCIVSIKSSFENQANNTD-NIHNVKNIFSIFLRDGSSN-KCPNLGPLCNTCK 304
           K++ K   + KSS  +   N D    N+ NI S+F+ DG+S   C   G L   C+
Sbjct: 751 KDYEK--YNCKSSLYDMNYNADPKCQNLDNILSVFVHDGASMCNCNPTGSLSKVCE 804


>BT015222-1|AAT94451.1| 1296|Drosophila melanogaster RE35801p
           protein.
          Length = 1296

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 143 KEFNKCIVSIKSSFENQANNTD-NIHNVKNIFSIFLRDGSSN-KCPNLGPLCNTCK 304
           K++ K   + KSS  +    +D    N+ NI S+F+ DG+S   C   G L   C+
Sbjct: 257 KDYEK--YNCKSSLYDMNYKSDPKCQNLDNILSVFVHDGASMCNCNPTGSLSKVCE 310


>AE014134-1348|AAN10647.1| 1788|Drosophila melanogaster CG7123-PB,
           isoform B protein.
          Length = 1788

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 143 KEFNKCIVSIKSSFENQANNTD-NIHNVKNIFSIFLRDGSSN-KCPNLGPLCNTCK 304
           K++ K   + KSS  +    +D    N+ NI S+F+ DG+S   C   G L   C+
Sbjct: 749 KDYEK--YNCKSSLYDMNYKSDPKCQNLDNILSVFVHDGASMCNCNPTGSLSKVCE 802


>AE014134-1347|AAF52563.1| 1788|Drosophila melanogaster CG7123-PA,
           isoform A protein.
          Length = 1788

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 143 KEFNKCIVSIKSSFENQANNTD-NIHNVKNIFSIFLRDGSSN-KCPNLGPLCNTCK 304
           K++ K   + KSS  +    +D    N+ NI S+F+ DG+S   C   G L   C+
Sbjct: 749 KDYEK--YNCKSSLYDMNYKSDPKCQNLDNILSVFVHDGASMCNCNPTGSLSKVCE 802


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,828,208
Number of Sequences: 53049
Number of extensions: 620779
Number of successful extensions: 2121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2098
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2682985500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)