Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120778.seq
(638 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81542-3|CAB04415.1| 308|Caenorhabditis elegans Hypothetical pr... 29 3.7
AF067942-6|AAG45579.1| 345|Caenorhabditis elegans Hypothetical ... 28 6.5
Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z74033-10|CAA98478.1| 805|Caenorhabditis elegans Hypothetical p... 27 8.6
AL024499-5|CAC42318.1| 562|Caenorhabditis elegans Hypothetical ... 27 8.6
AL022272-5|CAA18355.1| 805|Caenorhabditis elegans Hypothetical ... 27 8.6
AF031840-1|AAC13676.1| 562|Caenorhabditis elegans GLY6c protein. 27 8.6
AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical ... 27 8.6
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 27 8.6
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z81542-3|CAB04415.1| 308|Caenorhabditis elegans Hypothetical
protein F49A5.4 protein.
Length = 308
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 435 LVEGAQRGRQVSAFALETLNFVCGLARLTHD 343
+ G Q G+ SA ET++FVC L +D
Sbjct: 157 MTNGTQAGKWASASCTETMSFVCELPATIYD 187
>AF067942-6|AAG45579.1| 345|Caenorhabditis elegans Hypothetical
protein ZK6.4 protein.
Length = 345
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +3
Query: 6 LTRTTASKTCVLKRNCYEMKSI--RCVF 83
+TRTT K C L NC+ I +CVF
Sbjct: 36 ITRTTPVKKCYLGENCFTKTPITQKCVF 63
>Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical
protein F35E2.5 protein.
Length = 575
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = -3
Query: 231 MFFTLCMLSVLLA*FSKLLFMETIHLLNSLKKVRPLPSTIK--LW--LKYFENKKHNESI 64
+F+ + +++++ KL E LN+ K + + + IK W L FEN + E I
Sbjct: 8 IFYFIFVIAIIPIVTEKLSLKENKERLNTCGKDKDIYNGIKNNRWHILAAFENGNNIEYI 67
Query: 63 SSRNNCASKHTFSKRSYVLN 4
SS + +++H + +LN
Sbjct: 68 SSASLISNRHFITSAFSILN 87
>Z74033-10|CAA98478.1| 805|Caenorhabditis elegans Hypothetical
protein H12C20.2a protein.
Length = 805
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 611 NTLCRKSSYRKIATNICVIKLFSLI 537
N +CR+S+ R++ T I V KLF +
Sbjct: 133 NIICRQSAARELGTTIIVNKLFETL 157
>AL024499-5|CAC42318.1| 562|Caenorhabditis elegans Hypothetical
protein H38K22.5c protein.
Length = 562
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = -2
Query: 481 CQTWVLKKCPNHFASPRRGCSARTPSICICT 389
C W L+ CP + G R P I C+
Sbjct: 487 CLAWTLRSCPTQTTAQPSGQVTRVPKITDCS 517
>AL022272-5|CAA18355.1| 805|Caenorhabditis elegans Hypothetical
protein H12C20.2a protein.
Length = 805
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 611 NTLCRKSSYRKIATNICVIKLFSLI 537
N +CR+S+ R++ T I V KLF +
Sbjct: 133 NIICRQSAARELGTTIIVNKLFETL 157
>AF031840-1|AAC13676.1| 562|Caenorhabditis elegans GLY6c protein.
Length = 562
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = -2
Query: 481 CQTWVLKKCPNHFASPRRGCSARTPSICICT 389
C W L+ CP + G R P I C+
Sbjct: 487 CLAWTLRSCPTQTTAQPSGQVTRVPKITDCS 517
>AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical
protein W09B6.1b protein.
Length = 813
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 239 IFLRDGSSNKCPNLGPLCNTCKHITIRRRHPT 334
IF R S + N +C+T KH+TIR PT
Sbjct: 494 IFTRGTSRTEAMNT--MCSTLKHMTIRSSFPT 523
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 239 IFLRDGSSNKCPNLGPLCNTCKHITIRRRHPT 334
IF R S + N +C+T KH+TIR PT
Sbjct: 494 IFTRGTSRTEAMNT--MCSTLKHMTIRSSFPT 523
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = +1
Query: 196 QQHRQHTQCKKHFFDIFARRFIKQVPQFRTIMQYLQTYYNPTPAPDVDEIMCQSCKPANK 375
QQH +H + ++ D R F+K + + + +Y+P+ AP + + C
Sbjct: 42 QQHNEHNKQQQQQRDDVCRDFLKNICNRGSRCK----FYHPSEAPPISDHDYNFCIDYQN 97
Query: 376 IQCFECKCRYL 408
C CR++
Sbjct: 98 RGCQRDNCRFV 108
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,198,623
Number of Sequences: 27780
Number of extensions: 332878
Number of successful extensions: 1099
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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