Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120778.seq
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41580.1 68418.m05052 zinc finger (MIZ type) family protein c...    29   3.4  
At3g23070.1 68416.m02908 expressed protein contains Pfam domain,...    28   4.5  
At2g40250.1 68415.m04950 GDSL-motif lipase/hydrolase family prot...    28   6.0  
At4g08850.2 68417.m01455 leucine-rich repeat family protein / pr...    27   7.9  
At4g08850.1 68417.m01454 leucine-rich repeat family protein / pr...    27   7.9  
At3g04800.1 68416.m00518 mitochondrial import inner membrane tra...    27   7.9  
At1g77510.1 68414.m09026 protein disulfide isomerase, putative s...    27   7.9  

>At5g41580.1 68418.m05052 zinc finger (MIZ type) family protein
           contains Pfam domain PF02891: MIZ zinc finger
          Length = 703

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 275 NLGPLCNTCKHITIRRRHPTW-TRSCVSRASPQTKFNVSSANADTWRPR 418
           N G    T  H +  R+HP+  T   VSR S     +++  +   WRPR
Sbjct: 572 NYGVRGLTSSHASTSRQHPSGPTVQSVSRLSDLVDVDLTVPDTSNWRPR 620


>At3g23070.1 68416.m02908 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 881

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 71  SLCFLFSKYFNQSLIVDGKGLTFFKEFNKCIVSIKSSFENQANN 202
           S CF F +Y +   +   KG+TF    N  I S + SF    NN
Sbjct: 25  SFCFRFLRYSSSISLGSCKGVTFSSR-NDQIASRRFSFSRDCNN 67


>At2g40250.1 68415.m04950 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL3 GI:15054386, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 361

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 491 MRGMPNMGLKKMSQPFCKPSSRVLSEDAKYLHLHSKH 381
           +RG    GL +   P C+P SR   + +KYL   S H
Sbjct: 305 LRGCCGTGLLEAG-PLCQPLSRTCDDVSKYLFFDSVH 340


>At4g08850.2 68417.m01455 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1009

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/72 (20%), Positives = 32/72 (44%)
 Frame = +1

Query: 232 FFDIFARRFIKQVPQFRTIMQYLQTYYNPTPAPDVDEIMCQSCKPANKIQCFECKCRYLA 411
           + D+ + RF  ++P   T+    + YY      D+D+ + +     +++Q  +     L 
Sbjct: 554 YLDLSSNRFSSEIPP--TLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLD 611

Query: 412 SSLSTLDEGLQN 447
             +S+    LQN
Sbjct: 612 GEISSQFRSLQN 623


>At4g08850.1 68417.m01454 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1045

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/72 (20%), Positives = 32/72 (44%)
 Frame = +1

Query: 232 FFDIFARRFIKQVPQFRTIMQYLQTYYNPTPAPDVDEIMCQSCKPANKIQCFECKCRYLA 411
           + D+ + RF  ++P   T+    + YY      D+D+ + +     +++Q  +     L 
Sbjct: 554 YLDLSSNRFSSEIPP--TLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLD 611

Query: 412 SSLSTLDEGLQN 447
             +S+    LQN
Sbjct: 612 GEISSQFRSLQN 623


>At3g04800.1 68416.m00518 mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein
           contains Pfam PF02466: Mitochondrial import inner
           membrane translocase subunit Tim17
          Length = 188

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = +2

Query: 2   RFNTYDRFENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFKEFNKCIVSIKSS 181
           ++  Y+ ++ V    + L +   S  FLF +   +  +  G+ LTFF  +  C  S+  +
Sbjct: 16  KYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTGWGYCTGSVLGA 75

Query: 182 FE 187
           F+
Sbjct: 76  FK 77


>At1g77510.1 68414.m09026 protein disulfide isomerase, putative
           similar to protein disulfide isomerase precursor
           GB:P29828 GI:4704766 [Medicago sativa]; Pfam HMM hit:
           PF00085 Thioredoxins
          Length = 508

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 17  DRFENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFKEFNKCIVSIKSSFENQA 196
           D F++    A+ LR + D    L +K+  +   V+G  +  FK F++  V  K  F  +A
Sbjct: 173 DEFDSFMALAEKLRADYDFAHTLDAKFLPRGESVEGPAVRLFKPFDELFVDSK-DFNGEA 231


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,776,648
Number of Sequences: 28952
Number of extensions: 285663
Number of successful extensions: 882
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)