Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120777.seq
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      21   6.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   6.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   6.6  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    21   8.7  

>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 385  ESDSSWVVANLLDV*GYFLLDFLKSGLTVWWFSGIHFVYSYDELLTPRVKASK 227
            +S  ++ + N L V   FLL   K  L + W  G+    +YDE  T  V  SK
Sbjct: 1267 QSVFAFFMMNALFVLIVFLLTLKKDYLHIKWPFGVKTNITYDE-STQEVHISK 1318


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 385  ESDSSWVVANLLDV*GYFLLDFLKSGLTVWWFSGIHFVYSYDELLTPRVKASK 227
            +S  ++ + N L V   FLL   K  L + W  G+    +YDE  T  V  SK
Sbjct: 1267 QSVFAFFMMNALFVLIVFLLTLKKDYLHIKWPFGVKTNITYDE-STQEVHISK 1318


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 487 TENASLKPRCHPGHLPGPTDKPLASF 564
           T+   + P  H    PG   KP+ SF
Sbjct: 38  TDECQVTPVIHVLQYPGCVPKPIPSF 63


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 416 CCLRAIQKWARKRQQLGCSQSS*CMRIL 333
           CC  A+      RQ +  S+   C+R +
Sbjct: 615 CCYHAVAPGTDIRQSIALSRKKKCIRYM 642


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 416 CCLRAIQKWARKRQQLGCSQSS*CMRIL 333
           CC  A+      RQ +  S+   C+R +
Sbjct: 507 CCYHAVAPGTDIRQSIALSRKKKCIRYM 534


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 101 QRFHQEHDHRNLS 139
           + FH+EHD R  S
Sbjct: 260 RHFHEEHDTRRAS 272


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,952
Number of Sequences: 336
Number of extensions: 4214
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)