Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120777.seq
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              98   6e-21
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           95   6e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 91   9e-19
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     34   0.087
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)                 31   0.61 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.4  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               30   1.9  
SB_565| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.3  
SB_35972| Best HMM Match : DUF1379 (HMM E-Value=5.5)                   28   5.7  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    28   5.7  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              28   5.7  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)             28   5.7  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)           28   7.5  
SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)                      28   7.5  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              27   9.9  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 97.9 bits (233), Expect = 6e-21
 Identities = 43/73 (58%), Positives = 56/73 (76%)
 Frame = +3

Query: 33  IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 212
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 213 TREHALLAFTLGV 251
           TREHA+L  +LGV
Sbjct: 61  TREHAILVRSLGV 73


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 41/81 (50%), Positives = 57/81 (70%)
 Frame = +3

Query: 12  ERDXRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 191
           ERD   T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE 
Sbjct: 203 ERDKGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFET 262

Query: 192 GISKNGQTREHALLAFTLGVK 254
           G  + GQTREHA+LA T GVK
Sbjct: 263 GFERGGQTREHAMLAKTAGVK 283



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 17/38 (44%), Positives = 29/38 (76%)
 Frame = +2

Query: 257 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 370
           L++ VNKMD     ++E R+EEIK +++ ++KK+G+NP
Sbjct: 285 LVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 90.6 bits (215), Expect = 9e-19
 Identities = 41/46 (89%), Positives = 43/46 (93%)
 Frame = +3

Query: 3   LKAERDXRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 140
           LKAER+  ITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 15  LKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 32.7 bits (71), Expect = 0.26
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
 Frame = +2

Query: 413 NMLEPSTKMPWFKGWQVER------KEGKAERKMPH*SLDAILATCPAPLTSPWRLSPGK 574
           NM+  +++MPWFK W +ER      KE  A        LD+IL     P   P RL    
Sbjct: 53  NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPP-SRPSGLPLRLPLQD 111

Query: 575 TYYKNRVVLVTVAR 616
            Y    +  V V R
Sbjct: 112 VYKIGGIGTVPVGR 125


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 13/59 (22%), Positives = 29/59 (49%)
 Frame = +3

Query: 3   LKAERDXRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 179
           ++ ER   I++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 57  MEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 75  VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 179
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)
          Length = 312

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 487 TENASLKPRCHPGHLPGPTDKPLASFPWQDVLQKSGGIGYRGPVGQSLKNW--VW 645
           TEN +  P  +P   P PTD   ++     ++Q + GI   G V  S++ W  VW
Sbjct: 105 TENETHTPTTYPTPPPNPTDDTSSTVNMSSIVQPT-GIANGGAVEGSIRRWMAVW 158


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 24  RITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 164
           RI   +   +F+     + IID PGH  F      G+S  D A+L+V
Sbjct: 663 RIQTKMVKEEFDIKIPGLLIIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +3

Query: 27  ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 170
           IT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 124 ITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 524 ATCPAPLTSPWRLSPGKTYYKNRVVLVTVARSGRV 628
           A C  P  +PW   PG   YK+R VL+ V  S +V
Sbjct: 20  APCYGPALTPW---PGSPVYKSRHVLIIVYGSTQV 51


>SB_35972| Best HMM Match : DUF1379 (HMM E-Value=5.5)
          Length = 325

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 169 PVPVNSKLVSLRTVKPVSMPCSL-SPSVSKAH 261
           P P N+ L SLRT +P    CS  + S+SK H
Sbjct: 270 PHPANAALASLRTREPPEESCSYGNTSLSKHH 301


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 401 WHGDNMLEPSTKMPWFKGWQVERKE 475
           +H DN    +   PWF+ W  +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 69  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 179
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 84  IDAPGHRDFIKNMITGTSQADCAVLIVA 167
           +D PGH   +  M+ G +  D A+L++A
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIA 96


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +2

Query: 284  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 424
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
          Length = 173

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 224 CLARFHPRCQKLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIK 352
           CL      CQK++V +NK+D  +P   +   E++ K ++  ++
Sbjct: 19  CLVIGEILCQKMVVVLNKVDLLKPEKRDSFIEKMSKRLTKTLE 61


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 457 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 347
           P+LEP + G  L  + S  S  GH+ D+   ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414


>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
          Length = 506

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 535 GPTDKPLASFPWQDVLQKSGGIGYRG 612
           G T+ P+  +PWQ +L+ +GG  + G
Sbjct: 262 GGTEAPVNGWPWQAMLRSAGGSQFCG 287


>SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 530

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 535 GPTDKPLASFPWQDVLQKSGGIGYRG 612
           G T+ P+  +PWQ +L+ +GG  + G
Sbjct: 222 GGTEAPVNGWPWQAMLRSAGGSQFCG 247


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 75  VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 218
           +T++D PGH   IK +I G      A +I   GT   E G  ++G+ +
Sbjct: 104 MTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGGFGQSGKVK 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,841,163
Number of Sequences: 59808
Number of extensions: 523099
Number of successful extensions: 1585
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1583
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)