Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120771.seq
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0770 - 5756200-5756741,5756790-5757286,5757356-5757782,575... 31 0.80
04_03_0632 + 18200844-18200970,18201134-18201190,18201370-182014... 31 1.1
06_03_1285 - 28993305-28993442,28993559-28993798,28993881-289939... 29 2.4
10_02_0142 + 5785143-5785376,5785638-5785764,5785777-5786885 29 3.2
05_04_0402 - 20991628-20991755,20992461-20992578,20992670-209927... 29 3.2
04_04_0969 - 29787617-29787919,29788019-29788180,29788962-297890... 29 3.2
01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198... 29 3.2
07_03_1226 - 24998276-24998375,24998728-24998849,24998936-249997... 29 4.2
11_01_0607 - 4837257-4837447,4837526-4837631,4837913-4838005,483... 28 5.6
01_06_1512 + 37881055-37881229,37881388-37881444,37881537-378816... 28 5.6
05_04_0366 - 20663243-20663388,20663467-20663572,20664275-206643... 28 7.4
01_06_1567 + 38293612-38293795,38294467-38294523,38294609-382946... 28 7.4
02_01_0498 - 3614621-3614674,3614780-3617161 27 9.8
>06_01_0770 -
5756200-5756741,5756790-5757286,5757356-5757782,
5757854-5757911
Length = 507
Score = 31.1 bits (67), Expect = 0.80
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 138 DTPPFYFINTRDNFRDNIAEHVFDMLLERHG 230
D P F+NT D+F I +H+ + + E+HG
Sbjct: 318 DQCPASFLNTSDDFTARIVDHMVEHIKEQHG 348
>04_03_0632 +
18200844-18200970,18201134-18201190,18201370-18201460,
18201545-18201705,18202176-18202303,18202386-18202523,
18202966-18203058,18203546-18203704
Length = 317
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 376 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 290
FNT V P++Y FTIL +I ++I++K
Sbjct: 239 FNTAVVSPVYYVMFTIL--TIIANMIMYK 265
>06_03_1285 -
28993305-28993442,28993559-28993798,28993881-28993961,
28994370-28994429,28994523-28994628,28994861-28994921,
28995198-28995246,28995475-28995599,28995809-28995947,
28996432-28996503,28996615-28996742,28997037-28997136,
28997757-28997897,28998116-28998232,28998505-28998609,
28999037-28999153
Length = 592
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 209 HVTRKTWLV*KLSHCNTAFINSLIVNGFKYNQVD 310
H+ K W + + H +T+ + + GFK+N+V+
Sbjct: 553 HIENKGWTIQHVDHKDTSEKEEIRIRGFKFNKVE 586
>10_02_0142 + 5785143-5785376,5785638-5785764,5785777-5786885
Length = 489
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 646 KGKHNSFVSANPCKKGPRFRNVRNHVTQCGRPKN 545
KGKH V P K GP++R + NH RPK+
Sbjct: 302 KGKH--VVRTVPLKGGPKYRVLNNHQPCWERPKD 333
>05_04_0402 -
20991628-20991755,20992461-20992578,20992670-20992762,
20992841-20992978,20993070-20993197,20993270-20993430,
20993548-20993638,20993731-20993787,20993986-20994139
Length = 355
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 376 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAV 269
FNT V PI+Y FT L ++ I+FK + Q++
Sbjct: 248 FNTAVVSPIYYAMFTSL--TILASAIMFKDWSGQSI 281
>04_04_0969 -
29787617-29787919,29788019-29788180,29788962-29789093,
29789708-29789760,29790518-29791007
Length = 379
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -2
Query: 492 LGLPSFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAYSIHSS 361
LG + T ++ + PN+ ++ ++A++Q G + TC S + +
Sbjct: 163 LGSSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANGA 206
>01_03_0075 -
12218501-12218611,12219028-12219267,12219698-12219815,
12219949-12220016,12220124-12220375,12221362-12221463,
12221734-12221802,12221892-12221987,12222161-12222208,
12222352-12222479,12222818-12222896,12223651-12223797,
12223956-12224022,12224655-12224830,12225588-12225755,
12225879-12225992,12226657-12226722,12227306-12227524,
12228142-12228321,12228481-12228584,12228998-12229277,
12230582-12231004
Length = 1084
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +2
Query: 320 VCEYCEAEIKNWSEDECIEY-AHVTLSPYCAYANKIAEHESFGDNITINAVLVKEGRPKC 496
V E E +K W E E A LS C I E FGD + AV+ +G C
Sbjct: 617 VKESVEVAVKAWGEKSLTELEAEERLSYSCEKGRSILIVE-FGDILPKVAVIANKGLTNC 675
Query: 497 VYRC 508
+ C
Sbjct: 676 IIGC 679
>07_03_1226 -
24998276-24998375,24998728-24998849,24998936-24999702,
25000447-25000618
Length = 386
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = +2
Query: 362 DECIEYAHVTLSPYCAYANKIAEHESFGDNITINAVLVKEGRPKCVYRCCPIYSRVWIRL 541
DE E ++ A +A H+ D + + AV K G C YRCC + W+
Sbjct: 282 DEAAEAGGAEVADMAGAAAVLAPHQ---DVLRVGAVSHKGGLKMCKYRCC----KTWLAC 334
Query: 542 LIFG 553
+ G
Sbjct: 335 ALAG 338
>11_01_0607 -
4837257-4837447,4837526-4837631,4837913-4838005,
4838405-4838542,4838651-4838778,4838889-4839049,
4839145-4839235,4841437-4841602
Length = 357
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 376 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 290
FNT V PI+Y FT L ++ +I+FK
Sbjct: 233 FNTAVVSPIYYVMFTSL--TILASVIMFK 259
>01_06_1512 +
37881055-37881229,37881388-37881444,37881537-37881627,
37881759-37881919,37882002-37882129,37882215-37882352,
37882665-37882757,37882858-37882975,37883064-37883194
Length = 363
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 376 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAVDK 263
FN V PI+Y FT L ++ I+FK + Q+ K
Sbjct: 255 FNAAVVSPIYYAMFTTL--TILASAIMFKDWSGQSASK 290
>05_04_0366 -
20663243-20663388,20663467-20663572,20664275-20664367,
20664520-20664657,20664759-20664886,20664996-20665156,
20665277-20665367,20665460-20665516,20666288-20666444
Length = 358
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 376 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 290
FNT V PI+Y FT L ++ +I+FK
Sbjct: 249 FNTAVVSPIYYTMFTSL--TILASVIMFK 275
>01_06_1567 +
38293612-38293795,38294467-38294523,38294609-38294699,
38294799-38294959,38295045-38295172,38295291-38295428,
38295717-38295809,38298219-38298324,38298393-38298517
Length = 360
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 376 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 290
FNT V PI+Y FT L ++ +I+FK
Sbjct: 258 FNTAVVSPIYYTMFTSL--TILASVIMFK 284
>02_01_0498 - 3614621-3614674,3614780-3617161
Length = 811
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 504 LYTHLGLPSFTSTALMVMLSPND-SCSAILLAYAQYGD 394
LY+ GLP A + SPND S +A L A + GD
Sbjct: 52 LYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGD 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,861,250
Number of Sequences: 37544
Number of extensions: 332386
Number of successful extensions: 857
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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