Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120771.seq
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30) 33 0.27
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 1.1
SB_37613| Best HMM Match : zf-B_box (HMM E-Value=2.7e-07) 30 1.9
SB_29541| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_8042| Best HMM Match : DUF803 (HMM E-Value=0) 29 3.3
SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19) 29 3.3
SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 29 3.3
SB_1636| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 28 5.7
SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 28 7.6
>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
Length = 514
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 287 GFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYC 406
GF Y D V C C ++NW D+ H SP+C
Sbjct: 156 GFYYLGDQDSVKCYKCGVALRNWEPDDLPWVEHEKWSPHC 195
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +2
Query: 248 HCNTAFINSLIVNGFKYNQVDDHVV-CEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKI 424
HCN F S +++ K D+ +V C YC+ + E IE H CA N++
Sbjct: 503 HCNGRFPASDLLSHVKMFHRDEKLVKCNYCKKIFTKYGMKEHIEQVHNKPGFKCAQCNQM 562
>SB_37613| Best HMM Match : zf-B_box (HMM E-Value=2.7e-07)
Length = 533
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/82 (21%), Positives = 36/82 (43%)
Frame = +2
Query: 299 NQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAVLVK 478
N+ D + CE C++++ D+C E+ + +C +++ + I + VK
Sbjct: 15 NKADISITCETCQSDVATGRCDDCCEF----MCEFCITSHRRLLRTNQHKIIGLKEATVK 70
Query: 479 EGRPKCVYRCCPIYSRVWIRLL 544
G+ C CP + + LL
Sbjct: 71 -GKSSCKSHYCPRHKGERLTLL 91
>SB_29541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/72 (22%), Positives = 32/72 (44%)
Frame = +2
Query: 299 NQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAVLVK 478
N+ D + CE C++++ D+C E+ + +C +++ + I + VK
Sbjct: 28 NKADISITCETCQSDVATGRCDDCCEF----MCEFCITSHRRLLRTNQHKIIGMKEATVK 83
Query: 479 EGRPKCVYRCCP 514
G+ C CP
Sbjct: 84 -GKSSCKSHYCP 94
>SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)
Length = 603
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 379 IFNTLVFGPIFYFCFTILAHNVIVDLIVFK 290
IFNT + PI+Y FT+L +I I+FK
Sbjct: 485 IFNTSLVTPIYYVMFTLL--TIIASAILFK 512
>SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)
Length = 314
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 254 NTAFINSLIVNGFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYC 406
++A + L GF + DD V C C+ +K W D+ +H P C
Sbjct: 149 SSANVFELARAGFVFTGRDDVVECFKCKGTLKQWKVDDRPIESHREFYPDC 199
>SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 462
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/82 (23%), Positives = 34/82 (41%)
Frame = +2
Query: 299 NQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAVLVK 478
N+ D + CE C++++ D+C E+ + +C A+ I + VK
Sbjct: 91 NKADISITCETCQSDVATGRCDDCCEF----MCEFCITAHGRFLRTKQHKIIGVKEATVK 146
Query: 479 EGRPKCVYRCCPIYSRVWIRLL 544
G+ C CP + + LL
Sbjct: 147 -GKSNCKSHYCPRHKGERLTLL 167
>SB_1636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -1
Query: 457 GNVVAKRFVLSNLVGIRAIRRQGYVCIF-NTLVFGPIFYFCFTI 329
G++V ++V+ + +RA+R QG++ I +TL P +Y + I
Sbjct: 65 GHLVIGQYVIKGTLLLRAVRYQGHLVITGSTLSIAPCYYGQYVI 108
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 41 TKTKLGHINVSLNQNDPNVLILTVTL 118
TKT L + +NDPNVL +TV L
Sbjct: 760 TKTALSTVQCCSLENDPNVLAITVIL 785
>SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 604
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/82 (23%), Positives = 33/82 (40%)
Frame = +2
Query: 299 NQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAVLVK 478
N+ D + CE C+ ++ D+C E+ + +C A+ I + VK
Sbjct: 91 NKADISITCETCQNDVATGRCDDCCEF----MCEFCITAHGRFLRTKQHKIIGVKEATVK 146
Query: 479 EGRPKCVYRCCPIYSRVWIRLL 544
G+ C CP + + LL
Sbjct: 147 -GKTNCKSHYCPRHKGERLTLL 167
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,331,500
Number of Sequences: 59808
Number of extensions: 417044
Number of successful extensions: 1140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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