Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120771.seq
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04820.1 68416.m00522 expressed protein contains PFam profile...    32   0.38 
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ...    30   1.2  
At4g38730.1 68417.m05486 expressed protein                             30   1.5  
At4g09640.1 68417.m01584 expressed protein several hypothetical ...    29   3.5  
At3g11390.1 68416.m01387 DC1 domain-containing protein contains ...    29   3.5  
At5g02330.1 68418.m00156 DC1 domain-containing protein contains ...    28   4.7  
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ...    28   4.7  
At3g23870.1 68416.m03000 permease-related low similarity to puri...    28   4.7  
At1g34470.1 68414.m04283 permease-related low similarity to puri...    28   4.7  
At1g71900.1 68414.m08312 expressed protein                             28   6.2  
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea...    27   8.2  
At4g13800.1 68417.m02139 permease-related contains 9 predicted t...    27   8.2  

>At3g04820.1 68416.m00522 expressed protein contains PFam profile
           PF01142: Uncharacterized protein family UPF0024;
           expression supported by MPSS
          Length = 747

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 532 PYATVNWTASVHTLGSAFFY*YSVDGNVVAKRFVLSNLVGIRAIRRQGY 386
           PY++++WT  + T+ + F    +VD   V     +S L G R I +Q Y
Sbjct: 17  PYSSLSWTTKIATIATNFEGMKTVDEADVGISCFISQLPGFRGILKQRY 65


>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +2

Query: 308 DDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITI 460
           D++++C+ C   I   +   C++     L   CA A++  +H   G  +T+
Sbjct: 388 DENIICQACILPIYEGNYYSCMDQCDFVLHEACANASRKKDHALHGHPLTL 438


>At4g38730.1 68417.m05486 expressed protein
          Length = 326

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 376 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAVD 266
           FN  +  PI+Y  FT L   ++   I+FK  N Q  D
Sbjct: 237 FNAAIVSPIYYVMFTTL--TIVASAIMFKDWNGQNTD 271


>At4g09640.1 68417.m01584 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 386

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 376 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQA 272
           FNT V  PI+Y  FT L   ++  +I+FK  + Q+
Sbjct: 251 FNTAVVSPIYYVMFTSL--TILASVIMFKDWDRQS 283


>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
 Frame = +2

Query: 302 QVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHE--SFGDNITINAVLV 475
           Q DD   CE CE E+             +T+  +C + N +      +F    T    ++
Sbjct: 602 QADDMYWCEICEKEVNPADWFYTCNICCITIHLHCIFGNSVYMKPGLTFEYGFTSKVEVL 661

Query: 476 KEG---RPKCVYRC---CPIYS 523
           +     RP CV RC   CP YS
Sbjct: 662 RNSNSTRPLCV-RCGNHCPGYS 682


>At5g02330.1 68418.m00156 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +2

Query: 308 DDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAVL-VKEG 484
           +++++C+ C   I   +   C++  +  L   CA A++  +H      +T+  V  ++  
Sbjct: 388 NENIICQACILPIYEGNYYSCMDQCNFILHEACANASRKKDHALHSHPLTLKVVSDIQNE 447

Query: 485 RPKCVYRC 508
             K  +RC
Sbjct: 448 YFKGYFRC 455


>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 681

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/67 (25%), Positives = 27/67 (40%)
 Frame = +2

Query: 308 DDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAVLVKEGR 487
           D++  C  C   I       C+E   + L   CA A ++  H      +T+N    + G 
Sbjct: 371 DENKYCRGCSFPIYEGQFYSCMECDFI-LHESCANAPRMKRHPLHPHPLTLNVATKELGN 429

Query: 488 PKCVYRC 508
            + VY C
Sbjct: 430 NEGVYHC 436


>At3g23870.1 68416.m03000 permease-related low similarity to purine
           permease [Arabidopsis thaliana] GI:7620007; contains 9
           predicted transmembrane domains; contains Pfam PF05653:
           Protein of unknown function (DUF803); identified as
           COG0697, Permeases of the drug/metabolite transporter
           (DMT) superfamily
          Length = 335

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 376 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 290
           FNT V  P++Y  FT     +I  +I+FK
Sbjct: 240 FNTAVISPVYYVMFT--TFTIIASMIMFK 266


>At1g34470.1 68414.m04283 permease-related low similarity to purine
           permease [Arabidopsis thaliana] GI:7620007
          Length = 368

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 376 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 290
           FNT V  PI+Y  FT L   ++  +I+FK
Sbjct: 251 FNTAVVSPIYYVMFTSL--TILASVIMFK 277


>At1g71900.1 68414.m08312 expressed protein
          Length = 343

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 376 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 290
           FNT +  PI+Y  FT L   ++  +I+FK
Sbjct: 251 FNTAIVSPIYYVMFTSL--TILASVIMFK 277


>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to Myosin heavy chain kinase B (MHCK
           B).(SP:P90648) [Dictyostelium discoideum]
          Length = 495

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 571 HDYEHCGSGDLFYTGSRRRNCYVF 642
           H Y    SGDL YTGS  +N  V+
Sbjct: 127 HIYSLAASGDLLYTGSDSKNIRVW 150


>At4g13800.1 68417.m02139 permease-related contains 9 predicted
           transmembrane domains; contains Pfam PF05653: Protein of
           unknown function (DUF803); identified as COG0697,
           Permeases of the drug/metabolite transporter (DMT)
           superfamily
          Length = 336

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 376 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 290
           FNT V  P++Y  FT     ++  +I+FK
Sbjct: 240 FNTAVISPVYYVMFT--TFTILASMIMFK 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,750,389
Number of Sequences: 28952
Number of extensions: 273073
Number of successful extensions: 711
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)