Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120767.seq
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6714| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_41097| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          28   6.2  
SB_46979| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_6714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 127 NRNDEETCINVDNIATDESQQKNAEVKEDIASSDNMEIDDKE 252
           N+ D+E     D    D+  ++N E KE++   D  E+D +E
Sbjct: 22  NKEDKEKMDKEDKEEMDKQDKENKEDKEEMDKEDKEEMDQEE 63


>SB_41097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 136 DEETCINVDNIATDESQQKNAEVKEDIASSDN 231
           D   C++ D+  +   + K  E K+DIA SDN
Sbjct: 2   DASVCVDADDFYSKLEELKEKEKKKDIALSDN 33


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 563 SHVPAYKGRSTIYHKYIDIPMPRRPQVLCARYIS 664
           SH+P     S I + Y+   +P  P+ LC  Y S
Sbjct: 131 SHIPVMCEDSKIPYAYVPSKVPNTPRTLCILYCS 164


>SB_46979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 292 NSHSSEYIPCIQIILCHQFPYYHWKQYLLLLQHFSVVIH 176
           +SH++ ++P   +I  H + YY++  Y       S + H
Sbjct: 26  SSHTTGHLPTRPVIFPHNYAYYYYYYYYYYYPALSYIKH 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,719,414
Number of Sequences: 59808
Number of extensions: 353252
Number of successful extensions: 867
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)