Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120767.seq
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.3  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 300 LSKIVIARNIYHVSKLFFVINFHIIT 223
           L  +++   +YH SKL  V N  I++
Sbjct: 81  LGNVLVILAVYHTSKLRNVTNMFIVS 106


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 507 YNHQKTNTDWSIFN*NYDRLYSNITLFI 424
           YN+   N   + +N NY +LY N  + I
Sbjct: 97  YNNNYNNNYNNNYNNNYKKLYKNYIINI 124


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 507 YNHQKTNTDWSIFN*NYDRLYSNITLFI 424
           YN+   N   + +N NY +LY N  + I
Sbjct: 97  YNNNYNNNYNNNYNNNYKKLYKNYIINI 124


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -2

Query: 271 IPCIQIILCHQFPYYHWKQYLLLLQHFSVVIHLWRYCQH 155
           I C+ I         H ++    L+H   VIH W+Y  +
Sbjct: 8   IVCLSIACQDVTSAIHQRKSSKNLEHSMNVIHEWKYIDY 46


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 529 INPYGYTIQSSKNEHRLVH 473
           ++PYGY    S  +  L+H
Sbjct: 322 VSPYGYVKPISPEQEELIH 340


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -1

Query: 551 PIIRKLQYQSVWIY 510
           PI++   Y + W+Y
Sbjct: 188 PIVQSFDYNNTWVY 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,419
Number of Sequences: 438
Number of extensions: 3633
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)