Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120764.seq
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    32   0.068
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    29   0.48 
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   1.9  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    27   1.9  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    26   4.5  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    26   4.5  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    26   5.9  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   7.8  

>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 32.3 bits (70), Expect = 0.068
 Identities = 27/95 (28%), Positives = 44/95 (46%)
 Frame = +1

Query: 46  NYQTIMSSTEETSQLKAGHPPAVKAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPS 225
           NY ++ SS +E  +LK GH   ++ G   + +H +    +S  P   D++ L+   P  S
Sbjct: 4   NYTSLKSSVDEEDELKTGHEIDLEKG--PLPEHNS--EGESTLPPYSDISKLANLVPEDS 59

Query: 226 NPISIAGAPKKVMQTSLQKQLKWPTVLSLQRTLIS 330
           +      A   V +    K L  P + SL R LI+
Sbjct: 60  STGPTETANPNVERRQEFKDLH-PNIYSLLRLLIA 93


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +1

Query: 181 NEDLTGLSGPSPVPSNPISIAGAPKKVMQTSLQKQLKWPTVLSLQRTLISDQAQTSNSPE 360
           N +  G   P  V    +S+  A    + T L+K  ++P+V+  ++++    A+ SNS +
Sbjct: 48  NSERVGSGSPGSVSMQVLSLFSAVNSALAT-LEKSEEFPSVVKDEQSIFPAVAKASNSLD 106

Query: 361 SRNQHI 378
              Q+I
Sbjct: 107 ELAQNI 112


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 64  SSTEETSQLKAGHPPAVKAGGMRITQHK 147
           S+T  TSQLK  H   VK     +T+H+
Sbjct: 24  STTPSTSQLKHSHESNVKMSTSTVTEHR 51


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +1

Query: 193 TGLSGPSPVPSNPISIAGAP--KKVMQTSLQKQLKWPTVLSLQRTLISD 333
           +G+  P P+PS+ +S+A  P  K+V   SL  QL +  V   ++T + D
Sbjct: 500 SGIVEPLPIPSDVLSLAFHPDGKEVCVASLDGQLTFWNVQEGKQTSLID 548


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +1

Query: 136 TQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPKKVMQTSLQKQLKW-PTVLSL 312
           TQ + P + D+ +            SP+ +   + AG P+    TSL K L+   T  SL
Sbjct: 617 TQTEVPSANDTSKQLASLHDMRKSQSPICARSATSAGLPRFEYHTSLSKSLEHSSTPASL 676

Query: 313 QRT 321
           Q T
Sbjct: 677 QAT 679


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 335 WSEINVRWRLRTVGHLSCFWSEVCITFFGAPAM 237
           ++E++  W+  TVG  S +W ++    F   A+
Sbjct: 279 YNEVDAAWKSLTVGDKSYYWGDIYALKFEVEAL 311


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 201 LWAISRSVQSDLHCRSSKKGNADFTPEAAQVAHSPKP 311
           LW   ++V  D+HC S +K N    PE  ++   P P
Sbjct: 381 LWPRFQAVM-DMHCESLRKTNLSVKPE--EITSRPHP 414


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 199 LSGPSPVPSNPISIAGAP 252
           L+GP   PS+P+S  G+P
Sbjct: 15  LTGPRAAPSSPVSTNGSP 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,639
Number of Sequences: 5004
Number of extensions: 53609
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)