Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120764.seq
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0368 + 2645007-2645317,2645422-2645509,2648927-2649183,264... 33 0.22
04_03_0589 - 17604361-17604800,17604887-17604949,17605025-176052... 31 0.87
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 31 1.2
08_01_0816 + 7935399-7936286,7936842-7936997,7937124-7937335,793... 29 2.7
07_03_0615 + 19983003-19983238,19983297-19983558,19983651-199839... 29 2.7
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023 29 2.7
07_03_0763 - 21331534-21331779,21331871-21332021,21332093-213323... 29 3.5
05_01_0511 + 4256220-4256828,4256920-4257175,4257247-4257309,425... 29 3.5
10_08_0006 - 14035990-14036135,14036246-14036339,14036845-140371... 29 4.7
05_04_0051 + 17511696-17512526 28 6.2
03_03_0153 - 14910420-14910769,14910946-14911008,14911084-149113... 28 6.2
02_01_0582 + 4315336-4315956,4316060-4316188,4316282-4316581 28 6.2
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 28 6.2
07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706... 28 8.1
03_05_0793 + 27755704-27756386,27756473-27757274,27757379-277576... 28 8.1
>06_01_0368 +
2645007-2645317,2645422-2645509,2648927-2649183,
2649453-2649504,2649527-2649838
Length = 339
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +3
Query: 213 SRSVQSDLHCRSSKKGNADFTPEAAQVAHSPKPPAHINLRPSPNIQQPRK 362
+RSV L CR+ AD P+ P+P AH+ P P PRK
Sbjct: 173 ARSVLGLLTCRADDVAQADVAPQRPPRPTGPRPAAHV---PRPTPPSPRK 219
>04_03_0589 -
17604361-17604800,17604887-17604949,17605025-17605280,
17605373-17605634,17605739-17605885,17606118-17606236,
17606373-17606531,17606911-17606947,17607023-17607174
Length = 544
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 216 RSVQSDLHCRSSKKGNADFTPEAAQVAHSPKPPAHINLRPSP 341
RS+ L CR+ AD + V SP+P AH+ RP+P
Sbjct: 333 RSILRVLTCRADDVARADAAVQRPPVPTSPRPAAHVP-RPTP 373
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 151 PHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAP 252
P S + +P+ L L P P P P +IAGAP
Sbjct: 213 PASSEPVDPSAASLPPLPPPPPPPPKPANIAGAP 246
>08_01_0816 +
7935399-7936286,7936842-7936997,7937124-7937335,
7937473-7937665
Length = 482
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 148 TPHSKDSKEPANEDL--TGLSGPSPVPSNPISIAGAPKKV 261
TP ++ + P L TGL P+ S P++ +GAP+KV
Sbjct: 137 TPMARQNSGPLPPVLPTTGLITSGPISSGPLNSSGAPRKV 176
>07_03_0615 +
19983003-19983238,19983297-19983558,19983651-19983906,
19983982-19984044,19984131-19984570
Length = 418
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 216 RSVQSDLHCRSSKKGNADFTPEAAQVAHSPKPPAHINLRPSP 341
RS+ L CR+ AD + V P+P AH+ RP+P
Sbjct: 207 RSILRVLTCRADDVARADAAVQRPPVPTGPRPAAHVP-RPTP 247
>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
Length = 432
Score = 29.5 bits (63), Expect = 2.7
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Frame = +1
Query: 103 PPAVKAGGMRITQHKTPHSKDSKEPANEDLTGLSG-----PSPVP---SNPISIAGAPKK 258
PPA +TPH+ S P DL LSG P P+P +P+S PKK
Sbjct: 63 PPAAPLAPAPPDSPRTPHTYGSLLPVYGDLPPLSGAVLQEPLPLPEGSDHPVS----PKK 118
Query: 259 VMQTS--LQKQLKWPTVLSLQRTLISDQ 336
++ + LQ++ P V S T Q
Sbjct: 119 TIEVASLLQERADQPVVTSNSATTTRPQ 146
>07_03_0763 -
21331534-21331779,21331871-21332021,21332093-21332330,
21332449-21332659,21332744-21332871,21333569-21333706,
21333825-21334644
Length = 643
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 178 ANEDLTGLSGPSPVPSNPISIAGAPKKVMQTSLQKQLKWPTVLSLQRTLISDQAQTS 348
+ L L GPSP P+ P++ AG K ++++ + PT+ + T+ + TS
Sbjct: 251 SGRSLLQLPGPSPSPAPPVTAAGERSKNKRSAI-LAISMPTIALVLATIAAWFCSTS 306
>05_01_0511 +
4256220-4256828,4256920-4257175,4257247-4257309,
4257397-4257491
Length = 340
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 198 SLWAISRSVQSDLHCRSSKKGNADFTPEAAQVAHSPKPPAHINLRPSP 341
S W+I R L CR+ AD P+ P+P AH++ RP+P
Sbjct: 242 SAWSILRV----LTCRAVDVAQADAAPQRPPRPIGPRPAAHVH-RPTP 284
>10_08_0006 -
14035990-14036135,14036246-14036339,14036845-14037176,
14038040-14038094,14038682-14038750,14038940-14039039,
14039212-14039255,14039705-14039873,14040262-14040333,
14040439-14040519,14040586-14040650,14040796-14041260
Length = 563
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 100 HPPAVKAGGMRITQHKTPHSKDSKEPANE--DLTGLSGPSPVPSNP 231
H A GG + K P S S A+E D T S PS PS+P
Sbjct: 11 HSGATSGGGASHRKRKLPPSSLSDATADEDDDTTAPSSPSTSPSSP 56
>05_04_0051 + 17511696-17512526
Length = 276
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +1
Query: 97 GHPPAVKAGGMRITQHKTPHSKDSKE-PANEDLTGLSG--PSPVPSNPISIAGAP 252
GHPP+ + G H P D + P ++++ G +P PS+PI G P
Sbjct: 110 GHPPSDEIYGHGGGHHTAPGPSDPIDPPPSDEIYNRGGHHTAPGPSDPIDPIGPP 164
>03_03_0153 -
14910420-14910769,14910946-14911008,14911084-14911339,
14911432-14911522,14911798-14912096,14912177-14912295,
14922536-14922594,14922676-14922965,14923052-14923567,
14923634-14923936
Length = 781
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 216 RSVQSDLHCRSSKKGNADFTPEAAQVAHSPKPPAHINLRPSP 341
RS+ L CR AD + V P+P AH+ RP+P
Sbjct: 600 RSILRVLTCRVDDVARADAAVQRPPVLTGPRPAAHVP-RPTP 640
>02_01_0582 + 4315336-4315956,4316060-4316188,4316282-4316581
Length = 349
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -2
Query: 245 PAMEIGLDGTGDGPERPVKSSLAGSLLSFE*GVLCWVILIPPAFTAGG 102
PAME+G G G +P SS + L G V L+P A GG
Sbjct: 178 PAMELGFAGGGGAAVKPSYSSYTAASLGNS-GSSSEVGLVPDAICGGG 224
>01_06_1742 - 39585879-39585994,39586089-39586238,39586288-39586375,
39586479-39586640,39586753-39586877,39586992-39587030,
39587290-39587476,39587643-39587713,39589371-39589564,
39589656-39589767,39589899-39590082,39590177-39590503,
39590780-39591061,39591148-39591621,39591730-39591813,
39591850-39591939,39592024-39592247,39592503-39592600,
39592679-39593169,39593249-39593520,39594266-39594522,
39594672-39594890,39595007-39595167,39595249-39595441,
39595528-39595633,39595947-39596121,39596404-39596556,
39596663-39596794,39597120-39597184,39597754-39597819,
39598433-39598511,39598587-39598767,39598864-39598976
Length = 1889
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +3
Query: 213 SRSVQSDLHCRSSKKGNADFTPEAAQVAHSPKPPAHINLRPSPNIQQPRK*KSAHLITK 389
S++ Q + HC S+ N A +PKP N S NI P K H+I K
Sbjct: 1425 SKTEQFEKHCGSTNPFNNLHVD--AMDTQTPKPTKEKNAADSRNISDPLLGKPLHVIVK 1481
>07_03_0636 +
20168180-20168462,20168961-20170303,20170401-20170678,
20170790-20170821,20170908-20171314,20171401-20171847
Length = 929
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 269 VCITFFGAPAMEIGLDGTGDGPERPVKSSLAGSLLSFE 156
VC+ FG AM G + TG RP + + G+L +F+
Sbjct: 11 VCVCIFGCLAMADGQNVTGGDGSRPAELRI-GALFTFD 47
>03_05_0793 +
27755704-27756386,27756473-27757274,27757379-27757634,
27758355-27758566,27760494-27760709
Length = 722
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 213 SRSVQSDLHCRSSKKGNADFTPEAAQVAHSPKP 311
SR+ ++ L C S++GN +PE + SP P
Sbjct: 193 SRTTKTALRCAQSRRGNP--SPERSSTGRSPSP 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,139,582
Number of Sequences: 37544
Number of extensions: 350723
Number of successful extensions: 1128
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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