Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120764.seq
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8369| Best HMM Match : CENP-B_N (HMM E-Value=1.6) 30 1.6
SB_34777| Best HMM Match : VWA (HMM E-Value=0) 29 2.7
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0) 29 3.6
SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11) 29 3.6
SB_12054| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_57159| Best HMM Match : PI-PLC-X (HMM E-Value=0) 29 4.8
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15) 28 6.3
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19) 28 6.3
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08) 28 8.3
>SB_8369| Best HMM Match : CENP-B_N (HMM E-Value=1.6)
Length = 427
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 641 ILWLFHIGLHDFXIPINLQLLYYIFLFCFVLFILSDTCHTIIY 513
ILW LH +P + Y ++ C++L+ L HT+I+
Sbjct: 46 ILWYLDPVLHSM-VPRSCATFYGTWILCYILWYLDPVLHTMIF 87
>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
Length = 1268
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 64 SSTEETSQLKAGHP--PAVKAGGMRITQ---HKTPHSKDSKEPANE 186
+ + + SQ+ P P VK GM IT +TP+S+ SK+P N+
Sbjct: 391 NDSTDGSQISIAQPSTPLVKETGMHITPVNPPQTPNSQQSKQPVNK 436
>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
Length = 1705
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +1
Query: 112 VKAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPKKV 261
V + I + S EPA++D+T G P P +P+ P V
Sbjct: 1161 VTSSSTDIAESSAEMSSSKVEPAHQDVTSQVGNPPTPPSPLEGPAQPASV 1210
>SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
Length = 828
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 100 HPPAVKAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVP-SNPISIAGAPKKVMQTS 273
HPP + + + +K+ + D +EP + L PSP P P +I+ P+ ++T+
Sbjct: 366 HPP--EQYPLPVDDNKSDSASDFQEPEVQILITRKSPSPEPVEEPEAISNTPEPALETT 422
>SB_12054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 106 PAVKAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAG 246
PA ++GG + +K +SK S+EP + + S P + I I G
Sbjct: 36 PARESGGWKFFNYKVGYSKSSEEPRSRS-GSTASDSDAPEDEIVIVG 81
>SB_57159| Best HMM Match : PI-PLC-X (HMM E-Value=0)
Length = 1289
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 64 SSTEETSQLKAGHPP--AVKAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPS 225
SST S L +G ++ + +T H HS + + ++D+T P+P P+
Sbjct: 574 SSTSTESDLSSGASELQSIHTPTVTVTSHGEKHSNFNFDEIDDDVTPTPSPTPTPT 629
>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
Length = 2110
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = +1
Query: 184 EDLTGLSGPSPVPSNPISIAGAPKKVMQTSLQKQLKWPTVLSLQRTLISDQAQTSNSPES 363
++++G + +NP S++G PK V+ TS+Q V SLQ+ ++ Q T N P +
Sbjct: 1700 QNVSGSQQKILLQTNPQSVSGLPKVVLPTSVQ------NVPSLQQKVLL-QTSTQNVPGT 1752
Query: 364 RNQ 372
++
Sbjct: 1753 HSK 1755
>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
Length = 1211
Score = 28.3 bits (60), Expect = 6.3
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +1
Query: 52 QTIMSSTEETSQLK-AGHPPAVKAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPSN 228
Q ++ S SQ HPPA + T H +P + S +P LT + P PSN
Sbjct: 460 QALLHSHPSPSQPSPVSHPPAQ---ALLHTSHPSPATHPSPKPCFTFLTLSTKPCFSPSN 516
Query: 229 PISIAGAPKKVMQTSL 276
P + K TSL
Sbjct: 517 PSPASHLSPKPCFTSL 532
>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
Length = 1258
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/91 (24%), Positives = 40/91 (43%)
Frame = +1
Query: 100 HPPAVKAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPKKVMQTSLQ 279
HPP + + + TQ + ++ P+ + + + +P P NP I + S Q
Sbjct: 270 HPPQLPSTQLPSTQLPSTQLPSTQLPSTQFPSTPAPINPTPINPTPINCS--SYQPNSHQ 327
Query: 280 KQLKWPTVLSLQRTLISDQAQTSNSPESRNQ 372
Q +LS Q L+S Q ++ + R+Q
Sbjct: 328 PQFPSTQLLSTQLQLLSTQLLSTQLQQHRSQ 358
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,549,731
Number of Sequences: 59808
Number of extensions: 388957
Number of successful extensions: 1017
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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