Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120764.seq
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72517-4|CAA96692.1|  105|Caenorhabditis elegans Hypothetical pr...    40   0.002
Z93383-4|CAB07626.1|   96|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC006733-5|AAF60485.2|  193|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z83216-6|CAB62783.1|  534|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z11505-7|CAA77581.1|  918|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    28   5.5  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    28   5.5  
AF039042-5|AAC48246.1|  307|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF036693-3|AAO61431.1|  544|Caenorhabditis elegans Hypothetical ...    28   5.5  
U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical p...    27   9.7  
AF003141-8|AAK21480.1|  141|Caenorhabditis elegans Hypothetical ...    27   9.7  

>Z72517-4|CAA96692.1|  105|Caenorhabditis elegans Hypothetical
           protein T28F4.5 protein.
          Length = 105

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 58  IMSSTEETSQLKAGHPPAVKAGGMRITQHKTPHSKDSKEPANED 189
           +M +    +++K GHPPA K GG R+   K   + DS + AN +
Sbjct: 1   MMDNNITETEMKVGHPPANKVGGRRVVNRKDRKNSDSNDNANSE 44


>Z93383-4|CAB07626.1|   96|Caenorhabditis elegans Hypothetical
           protein F54B8.4 protein.
          Length = 96

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 70  TEETSQLKAGHPPAVKAGGMRITQHKTPHSKDS 168
           ++E +    GH PA K GG RI  H    +++S
Sbjct: 2   SKEDNNAVVGHQPATKVGGRRIADHGNQRAQNS 34


>Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical
           protein B0001.7 protein.
          Length = 731

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 79  FPRLTTLLFDNFEFNLFMISGVYPRA 2
           FPR  + +F NF    +MI G+YP A
Sbjct: 71  FPRSNSPIFSNFTLGTWMIVGLYPDA 96


>AC006733-5|AAF60485.2|  193|Caenorhabditis elegans Hypothetical
           protein Y32H12A.4 protein.
          Length = 193

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +1

Query: 73  EETSQLKAGHPPAVKAGGMRITQHKTP-HSKDSKEPANEDLTGLSGPSPVPSNPISIAGA 249
           +E + L   HP     G M+I + KTP H  D +   +E + G+  P+  P   +S+  A
Sbjct: 55  DEMNILATYHPTDKDYGSMKIDEPKTPYHHSDGESECDEGVLGV--PTTRPRR-VSLGNA 111

Query: 250 --PKKVMQ 267
             P+KV +
Sbjct: 112 IDPEKVAE 119


>Z83216-6|CAB62783.1|  534|Caenorhabditis elegans Hypothetical
           protein C08F11.8 protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +1

Query: 208 PSPVPSNPISIAGAPKKVMQTSLQKQLKWPTVLSLQR--TLIS--DQAQTSNSPESRNQH 375
           P+P     I I G   K  + SL+   KW  +L L++   L+S    A++++ PE   Q+
Sbjct: 266 PAPTFDKIIPIGGISVKTQKKSLELPEKWNKILGLRKKNILVSFGSNARSADMPEHFKQN 325

Query: 376 I 378
           +
Sbjct: 326 V 326


>Z11505-7|CAA77581.1|  918|Caenorhabditis elegans Hypothetical
           protein F59B2.12 protein.
          Length = 918

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 43  QNYQTIMSSTEETSQLKAGHPPAVKAGGMRITQHKTPHSKDSKEPANEDLTG 198
           Q YQ + + TE  S +  G+  ++  GG + + HK   +KD K    E   G
Sbjct: 848 QRYQKLGNGTE--SSMDVGYEKSMAKGGDQTSSHKKTLAKDGKGHFTETKDG 897


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/54 (29%), Positives = 19/54 (35%)
 Frame = +1

Query: 103 PPAVKAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPKKVM 264
           PP  ++ GM       P       P      G   P P P  P S AG P  V+
Sbjct: 614 PPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGGPASVL 667


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/54 (29%), Positives = 19/54 (35%)
 Frame = +1

Query: 103 PPAVKAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPKKVM 264
           PP  ++ GM       P       P      G   P P P  P S AG P  V+
Sbjct: 440 PPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGGPASVL 493


>AF039042-5|AAC48246.1|  307|Caenorhabditis elegans Hypothetical
           protein ZK697.3 protein.
          Length = 307

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -2

Query: 464 IFIHNLIFAIL*LPNIFYSIIMYQPFSD*MC*FLLSGLLD-VWAWSEINVRWRL 306
           I ++ L+F ++ LP I +SI   +P+S  +  FL S +L  V+ ++ I   W +
Sbjct: 239 IALYILVFWLINLPQIAHSITSSEPYSPRLLGFLDSCILQYVFVYAMIISEWEI 292


>AF036693-3|AAO61431.1|  544|Caenorhabditis elegans Hypothetical
           protein C49A9.8 protein.
          Length = 544

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +1

Query: 199 LSGPSPVPSNPISIAGAPKKVMQTSLQKQLKWPTVLSLQR--TLIS--DQAQTSNSPE 360
           L  PSP     I I G   K  + SL+   KW  +L++++   LIS    A++ + PE
Sbjct: 274 LDFPSPTFDKIIPIGGFTVKTNEKSLKIDKKWDAILNIRKKNVLISFGSNAKSKDMPE 331


>U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical
           protein T08A9.1 protein.
          Length = 1330

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 175 PANEDLTGLSGPSPVPSNPISI 240
           P+ + L GL GP+P  S PISI
Sbjct: 597 PSLQQLEGLDGPAPGSSAPISI 618


>AF003141-8|AAK21480.1|  141|Caenorhabditis elegans Hypothetical
           protein W02D3.1 protein.
          Length = 141

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +1

Query: 154 HSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPKKVMQTSL 276
           HSKD+ E ANE L G    S VP    + A   K    +SL
Sbjct: 66  HSKDAIEMANEYLIGQLPESDVPKVETAAAKPSKNEKSSSL 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,860,826
Number of Sequences: 27780
Number of extensions: 304690
Number of successful extensions: 948
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)