Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120764.seq
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   0.91 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.4  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 136 TQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAPK--KVMQTSLQK 282
           T+ K+P S+D    +N   T +       S+  S+   PK  ++  T LQK
Sbjct: 85  TKSKSPESRDRSNTSNTSKTFILSDKLESSDDTSLFRGPKGIQINATELQK 135


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 151 PHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAP-KKVMQTSLQKQLKWPTVLSL 312
           P S  +  P   +++ +SG  P+P+ P S+   P    M   +++++   + LSL
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGPIRRRISDKSALSL 464


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +3

Query: 237 HCRSSKKGNADFTPEAAQVAHSPKPPAHINLRPSPNIQ 350
           H  S+   ++ + P A Q+ H+P    H    P P ++
Sbjct: 442 HQHSTPLAHSSY-PAAIQIGHTPHHHPHPPETPGPQVE 478



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = -2

Query: 335 WSEINVRWRLRTVG 294
           W+++N+RW +   G
Sbjct: 80  WNDVNMRWNVSDYG 93


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 439 ANIKLCININTNHTNTYW 492
           A+IKL  N   N  NT+W
Sbjct: 435 ADIKLTTNQQRNILNTFW 452


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 109 AVKAGGMRITQHKTPHSKDSKEPANEDLTGLS 204
           A  AG + I   + P   D++EP ++ L+G+S
Sbjct: 492 ACTAGTLGII-FQAPSLYDTREPVDQQLSGIS 522


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 382 IKCADFYFLGCWMF 341
           IK ++ +FLGC +F
Sbjct: 291 IKASEIWFLGCTIF 304


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 451 LCININTNHTNTYWYLFLP 507
           L +N++ NH   + Y F+P
Sbjct: 552 LLLNLSENHIEWFDYAFIP 570


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 602 IPINLQLLYYIFLFCFV 552
           +PI   +L+ IF FC V
Sbjct: 201 LPIGASVLFEIFPFCIV 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,392
Number of Sequences: 438
Number of extensions: 3659
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)