Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120764.seq
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63720.1 68418.m07998 hypothetical protein                          33   0.14 
At1g30750.1 68414.m03758 expressed protein                             31   0.55 
At4g02630.1 68417.m00357 protein kinase family protein contains ...    31   0.96 
At1g61540.1 68414.m06933 kelch repeat-containing F-box family pr...    30   1.7  
At1g16860.1 68414.m02035 merozoite surface protein-related conta...    30   1.7  
At5g52830.1 68418.m06558 WRKY family transcription factor              29   2.2  
At4g16845.2 68417.m02544 vernalization 2 protein (VRN2) identica...    28   6.8  
At4g16845.1 68417.m02543 vernalization 2 protein (VRN2) identica...    28   6.8  
At3g04910.1 68416.m00533 protein kinase family protein contains ...    28   6.8  
At1g78880.1 68414.m09195 balbiani ring 1-related / BR1-related c...    28   6.8  
At1g03340.1 68414.m00313 expressed protein similar to hypothetic...    28   6.8  

>At5g63720.1 68418.m07998 hypothetical protein 
          Length = 492

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
 Frame = +1

Query: 70  TEETSQLKAGHPPAVKAGGMRITQHKTPHSKDSKEPANEDLTGL-SGPSPVPSNPISIAG 246
           TEE  Q      P +++  M ++Q       +   P N+ L  + S P P+P   +S   
Sbjct: 175 TEECRQNSQASMPCLRSNYMTVSQKSVISGAEVTFPYNDQLVRVTSPPQPLPPRAVSGFK 234

Query: 247 APKKVMQTSLQKQLKWPTVLSLQRTLISDQAQTSNSPES 363
            P +  + S +  +  PT++  +     D +  + + ++
Sbjct: 235 KPNQSNRASQKMPIMKPTLMDQETETFDDDSSETEADQT 273


>At1g30750.1 68414.m03758 expressed protein
          Length = 212

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = +1

Query: 58  IMSSTEETSQLKAGHPPAVKAGGMRITQHKTPHSK-DSKEPANEDLTGLSGPSPVPSNPI 234
           ++SS  E +Q+     P    GG+ + Q++    +  S  P N+ LTGLS P  +  N  
Sbjct: 20  LVSSISEAAQVTKITTPLEPTGGVSVNQNQPILGQPSSSSPVNQPLTGLSQPL-IGFNQP 78

Query: 235 SIAGAPKKVM-QTSLQKQLKWP 297
           S  G  + ++ Q S    +  P
Sbjct: 79  SSTGLKQPILGQPSTSSSVNQP 100


>At4g02630.1 68417.m00357 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 492

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +3

Query: 198 SLWAISRSVQSDLHCRSSKKGNADFTPEAAQVAHSPKPPAHINLRPSPNIQQPRK 362
           SLW I R    +    SS K N    P  ++     +PP   +  P P+  Q R+
Sbjct: 42  SLWFIYRRSNKNKSLESSSKSNHTIVPVVSKEIQEIRPPIQPDPTPEPHQNQQRE 96


>At1g61540.1 68414.m06933 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 402

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 163 DSKEPANEDLTGLSGPSPVPSNPISIAGAPKKVMQT--SLQKQLKWPTVLSLQRTLIS 330
           + ++P  E    +  PSPV   PISI   P  ++    SL  +L +PT+  + +T  S
Sbjct: 2   NGEKPLRERKKKMPYPSPVTEEPISIMSLPYDLLLNCFSLVSRLYYPTLSLVSKTFRS 59


>At1g16860.1 68414.m02035 merozoite surface protein-related contains
           weak similarity to merozoite surface protein [Plasmodium
           falciparum] gi|12043655|gb|AAG47601
          Length = 474

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +1

Query: 193 TGLSGPSPVPSNPISIAGAPKKVMQTSLQKQLKWPTVLSLQRTLISDQAQTSNSPE 360
           TGL    P+ S P++ +GAP+KV        L    + S   T++ +QA T+  PE
Sbjct: 146 TGLITSGPITSGPLNSSGAPRKVSGPLDSSGL----MKSHMPTVVHNQAVTTLGPE 197


>At5g52830.1 68418.m06558 WRKY family transcription factor
          Length = 348

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 192 DWSLWAISRSVQSDLHCRSSKKGNADFTPEAAQVAHSPKPP 314
           DW L+A+ RS  S +   +S  G+ D      Q    P PP
Sbjct: 5   DWDLFAVVRSCSSSVSTTNSCAGHEDDIGNCKQQQDPPPPP 45


>At4g16845.2 68417.m02544 vernalization 2 protein (VRN2) identical
           to vernalization 2 protein [Arabidopsis thaliana]
           gi|16945788|gb|AAL32135
          Length = 380

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 147 NSSLKRQQRTSQ*RLDWSLWAISRSVQSDLHCRSS 251
           NS +++Q+  +   + W+    SR  + +LHC SS
Sbjct: 264 NSFVRKQRVIADGHISWACEVFSRFYEKELHCYSS 298


>At4g16845.1 68417.m02543 vernalization 2 protein (VRN2) identical
           to vernalization 2 protein [Arabidopsis thaliana]
           gi|16945788|gb|AAL32135
          Length = 440

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 147 NSSLKRQQRTSQ*RLDWSLWAISRSVQSDLHCRSS 251
           NS +++Q+  +   + W+    SR  + +LHC SS
Sbjct: 324 NSFVRKQRVIADGHISWACEVFSRFYEKELHCYSS 358


>At3g04910.1 68416.m00533 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
 Frame = +1

Query: 70  TEETSQLKAGHPPAVKAGGMRITQHKTPHSKDSKEPANEDLTGLSGPSPVPSNPISIAGA 249
           + E S + +GH  + +     +  ++ P +  S E  NE +  +SG       P      
Sbjct: 552 SRELSSIDSGHNHSEEEEEEEVL-YEDPENMFSCEAGNE-INHISGSGSFSFMPSKYCDE 609

Query: 250 PKKVMQTSLQKQLKW-PTVLSLQRTLISDQAQTSNSPES 363
           P +  +  +Q++L+W      ++   I D+   +  PES
Sbjct: 610 PSEKTENQVQQELRWLKAKCQIELRDIQDEQLKTRWPES 648


>At1g78880.1 68414.m09195 balbiani ring 1-related / BR1-related
           contains weak similarity to BR1 [Chironomus tentans]
           gi|7042|emb|CAA45607
          Length = 468

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 193 TGLSGPSPVPSNPISIAGAPKKV 261
           TGL    P+ S P++ +GAP+K+
Sbjct: 140 TGLITSGPITSGPLNSSGAPRKI 162


>At1g03340.1 68414.m00313 expressed protein similar to hypothetical
           protein GB:AAC79114
          Length = 385

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 276 PEAAQVAHSPKPPAHINLRPSPNIQQPR-K*KSAHLITKRLIH 401
           PE A     PK P    L+PSP  Q P+ + K   L  +  +H
Sbjct: 212 PEDAVTLAPPKSPKKTRLKPSPKKQNPKIRDKEYDLYERNRLH 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,952,378
Number of Sequences: 28952
Number of extensions: 282492
Number of successful extensions: 876
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)