Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120763.seq
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    27   2.6  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    26   4.5  
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy...    26   5.9  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   7.8  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   7.8  

>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +1

Query: 184  YGHWQQHVANTKKPPQQTAGKPFGQTQMAAVDMLQTINTTASQTAASLLI---NDITPNK 354
            Y H   HV N+ + P  T      Q ++ A D++++I  T  Q     LI    D  P  
Sbjct: 835  YEHGTMHVRNSIRTPTYTIDISVNQDEIIAADLMKSI--TVLQFIDDQLIEVARDYHPLW 892

Query: 355  TESLKILS 378
              S++ILS
Sbjct: 893  ATSVEILS 900


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 265 MAAVDMLQTINTTASQTAASLLINDITPNKTESLKIL 375
           +AA      +  +  Q  A  LIND+ PNK   L I+
Sbjct: 447 LAAYSKEAQLPGSIKQNIAQYLINDVVPNKDGDLSIV 483


>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -1

Query: 599 SSIFNRNLFISKYNAIALIVTDDAHLLCNYPWIVLS*TLPKKSNTLTV 456
           S +FN+ + +     ++   T+ A LLCN P+ V+   L  +S+ LTV
Sbjct: 171 SGLFNKAIQVMYNTLVSNWNTEYARLLCNLPFEVIKDLL--ESDKLTV 216


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 517 QSKCASSVTMSAIALYLEINKLRLKIDEPMQLGDMAPDISFALRRTSKRAVE 672
           +S  ASS ++  I  YL       K+DE ++      +IS A +R    AV+
Sbjct: 274 KSTGASSSSVEKIHAYLSGQIYHTKVDESLKKRQYEGNISAASKRVKSSAVQ 325


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 185 YHRYHLLKQSWLSSISRDISLS 120
           Y++  L K+SW  S+S +ISLS
Sbjct: 107 YYQEALRKKSWSRSLSNNISLS 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,127
Number of Sequences: 5004
Number of extensions: 51788
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)