Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120763.seq
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165     35   0.070
04_04_0954 + 29631929-29632004,29632397-29633437,29634409-29635547     29   3.5  
12_02_0889 + 24033905-24034127,24034689-24034960                       29   4.6  
06_01_1126 - 9277885-9277935,9278129-9278209,9278297-9278350,927...    29   4.6  

>01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165
          Length = 476

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 266 ICVCPKGLPAVCCG--GFFVFATCCCQCPYHRYHLLKQSWLSSISRDISLS 120
           ICV  K LP + CG  G ++F T   +  + +YHL  ++W   I   I  S
Sbjct: 381 ICVSSKALPTIFCGDTGGYIFHTPPTELFFTQYHLSSRTWSPLIDGSIGNS 431


>04_04_0954 + 29631929-29632004,29632397-29633437,29634409-29635547
          Length = 751

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +1

Query: 208 ANTKKPPQQTAGKPFGQTQMAAVDMLQTINTTASQTAASLL 330
           A     P+  AGKPF    M AVD+   I   A QT+A+LL
Sbjct: 30  AEAAAAPETPAGKPFRWWAMVAVDVFFLI---AGQTSATLL 67


>12_02_0889 + 24033905-24034127,24034689-24034960
          Length = 164

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 177 SMIWTLATTCRKHEEAAATDRRQTLRANANGGRRHVANH 293
           S++W   T      EA+ T   + L AN+ GG  H+  H
Sbjct: 110 SVVWKYMTLDPSGNEASCTYCTKKLSANSKGGTSHLRRH 148


>06_01_1126 -
           9277885-9277935,9278129-9278209,9278297-9278350,
           9278433-9278564,9278641-9278715,9279056-9279133,
           9279215-9279327,9279421-9279535,9280565-9280754,
           9281355-9281464,9281559-9281654,9281756-9281818,
           9281911-9281988,9282452-9282564,9282664-9282721,
           9282797-9282920,9282999-9283060,9283131-9283195,
           9283264-9283324,9284242-9284307,9284472-9284531,
           9284830-9284960,9285517-9285592,9285701-9285769,
           9286065-9286112,9286552-9286671,9286918-9287034,
           9287290-9287405,9288348-9288519,9289057-9289100,
           9290359-9290712,9291680-9291806
          Length = 1072

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 242 PAVCCGGFFVFATCCCQCPYHRYHLLKQ 159
           P      F   A+CCC+ P H+ HL  Q
Sbjct: 105 PVDATAPFVASASCCCRHPVHQQHLRLQ 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,260,585
Number of Sequences: 37544
Number of extensions: 334856
Number of successful extensions: 1018
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)