Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120763.seq
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   31   1.2  
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)         29   2.7  
SB_41568| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)                 29   4.7  
SB_45619| Best HMM Match : M (HMM E-Value=0.01)                        28   6.2  
SB_39546| Best HMM Match : FCH (HMM E-Value=8e-13)                     28   6.2  
SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   6.2  
SB_29512| Best HMM Match : L_lactis_RepB_C (HMM E-Value=4.1)           28   8.2  

>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +1

Query: 220 KPPQ-QTAGKPFGQTQMAAVDMLQTI-NTTASQTAASLLIN-DITPNKTESLKILSTQSV 390
           KP + +   KP  +T   A+DM Q + NT  S+T  S ++N D  P K  ++ +LST S 
Sbjct: 134 KPVEPEITSKPPEKTPSVAIDMPQRLENTAPSETNDSDVVNPDNKPVKRNNI-VLSTASW 192

Query: 391 GARNLLEPMQAN 426
             +    P + N
Sbjct: 193 SRKTSAPPSEKN 204


>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 266 ICVCPKGLPAVCCGGFFVFATCC 198
           IC CP+G  + CCG F   A CC
Sbjct: 20  ICRCPQGARS-CCGEFCQCADCC 41


>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
          Length = 1907

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -1

Query: 680  RRCSTARLDVRRRAKEISGAISPNCIGSSIFNRNLFISKYNAIALIVTDDAHLLCNYPW 504
            R  + A LD     + + GA+SP C   S  NRNL   K   +  +++D A    N  W
Sbjct: 1310 RDVTAAGLDTVEEVRRVFGAVSPYC---SQVNRNLLYLK--GLTYLLSDSAFAELNNRW 1363


>SB_41568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 266 WRPSTCCKPSTPRPLKRP 319
           WRPS  C P  P  L+RP
Sbjct: 15  WRPSNSCSPGDPLVLERP 32


>SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)
          Length = 672

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 246 TLRANANGGRRHVANHQHHGLSNGRVVVN 332
           T + + N G+R+V + QH G +N RV+++
Sbjct: 591 TNKRDINEGQRYVISGQHSGTTNKRVIID 619


>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
          Length = 1315

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -1

Query: 377 DKIFKLSVLLGVMSLINNDAAV*EAVVLMVCNMSTAAI--CVCPKGLPAVCCGG 222
           +K + LS L    +L+++ AA  +  V+M+  ++   +  C C  G+   CCGG
Sbjct: 734 EKRYFLSELDEQATLLDDLAAQKKVTVIMILVVADLVVFGCCCCGGVSCCCCGG 787


>SB_39546| Best HMM Match : FCH (HMM E-Value=8e-13)
          Length = 360

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 295 NTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIET 459
           NT+ +  A  L++ND+T  K +    L TQ +   +     +  + KI+ + +ET
Sbjct: 296 NTSTNLKANKLMVNDLTGEKLQHKNTLLTQELQIIDQQLEHKIRDLKIEKDNLET 350


>SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1038

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 295 NTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIET 459
           NT+ +  A  L++ND+T  K +    L TQ +   +     +  + KI+ + +ET
Sbjct: 244 NTSTNLKANKLMVNDLTGEKLQHKNTLLTQELQIIDQQLEHKIRDLKIEKDNLET 298


>SB_29512| Best HMM Match : L_lactis_RepB_C (HMM E-Value=4.1)
          Length = 726

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -1

Query: 185 YHRYHLLKQSWLSSISRDISLSNWYLVMMCLINDSGTIIS 66
           YH+Y    ++WLS  S  +S SN  L   CL ++ G+I++
Sbjct: 192 YHKYRKESKTWLS--SHVLSGSNPRLPSPCLSSEIGSILA 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,357,515
Number of Sequences: 59808
Number of extensions: 404053
Number of successful extensions: 1335
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)