Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120763.seq
(689 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p... 30 1.8
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. 30 1.8
U23523-5|AAC46556.1| 77|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z92838-4|CAB07410.1| 1012|Caenorhabditis elegans Hypothetical pr... 28 7.2
AY099352-1|AAM34494.1| 891|Caenorhabditis elegans gamma-tubulin... 28 7.2
AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical ... 28 7.2
AF040644-1|AAB94969.2| 891|Caenorhabditis elegans Gamma-tubulin... 28 7.2
Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr... 27 9.6
AL110478-1|CAB54340.2| 537|Caenorhabditis elegans Hypothetical ... 27 9.6
>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -1
Query: 656 DVRRRAKEISGAISPNCIGSSIFNRNLFISKYNAIALIVTDDAHLLCNYPWIV 498
D RR KE G+ P+ G S+ +++ + ++ + ++T + HLL W V
Sbjct: 564 DTRRTLKESIGSAKPHSQGFSLSDKSFVMISTHSCSSMLTQNEHLLNVLRWRV 616
>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -1
Query: 656 DVRRRAKEISGAISPNCIGSSIFNRNLFISKYNAIALIVTDDAHLLCNYPWIV 498
D RR KE G+ P+ G S+ +++ + ++ + ++T + HLL W V
Sbjct: 564 DTRRTLKESIGSAKPHSQGFSLSDKSFVMISTHSCSSMLTQNEHLLNVLRWRV 616
>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
Length = 1781
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -1
Query: 656 DVRRRAKEISGAISPNCIGSSIFNRNLFISKYNAIALIVTDDAHLLCNYPWIV 498
D RR KE G+ P+ G S+ +++ + ++ + ++T + HLL W V
Sbjct: 564 DTRRTLKESIGSAKPHSQGFSLSDKSFVMISTHSCSSMLTQNEHLLNVLRWRV 616
>U23523-5|AAC46556.1| 77|Caenorhabditis elegans Hypothetical
protein F53A9.1 protein.
Length = 77
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +3
Query: 243 QTLRANANGGRRHVANHQHHGLSN--GRVVVNQRHY 344
QT+ + +GG H +H HHG + G + H+
Sbjct: 32 QTVHVHTDGGHHHGHHHHHHGFLHELGHAMTGHHHH 67
>Z92838-4|CAB07410.1| 1012|Caenorhabditis elegans Hypothetical
protein T03D8.5 protein.
Length = 1012
Score = 27.9 bits (59), Expect = 7.2
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Frame = +1
Query: 193 WQQHVANTKKPPQQTAGKPFGQTQMAAVDMLQTINTTASQTAASLLINDITPNKTESLKI 372
WQ H ++ KPPQ+ T ++ + T+ T+ T IN + S
Sbjct: 462 WQVHFSSLVKPPQK-------NTMHSSRSLQSTVTTSTKVT-----INSKKDTERHSFYF 509
Query: 373 LSTQSVGAR--NLLEPMQANETKI--KLNRIETVNVLDFLGSVYDN 498
L+ SV AR N N+ + K+ ++ N+ F+G D+
Sbjct: 510 LNNDSVVARKHNFRATFTKNDRAMFRKMRNVDNDNLCKFIGLSLDS 555
>AY099352-1|AAM34494.1| 891|Caenorhabditis elegans gamma-tubulin
ring protein GRIP-1 protein.
Length = 891
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 334 NDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRI 453
ND K +I +++GARNL++ N T+ KLN +
Sbjct: 840 NDENARKARIAEICQKKTIGARNLMD--SVNTTQRKLNEL 877
>AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical
protein Y64G10A.1 protein.
Length = 302
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -1
Query: 332 INNDAAV*EAVVLMVCNMSTAAICVCPKGLPAVCCGG 222
+ N A V E M+CN T A C P+G A CC G
Sbjct: 59 LKNCACVGEPTTTMLCN--TIA-CNYPRGSEAPCCNG 92
>AF040644-1|AAB94969.2| 891|Caenorhabditis elegans Gamma-tubulin
interacting proteinprotein 1, isoform a protein.
Length = 891
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 334 NDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRI 453
ND K +I +++GARNL++ N T+ KLN +
Sbjct: 840 NDENARKARIAEICQKKTIGARNLMD--SVNTTQRKLNEL 877
>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical
protein C05D12.2 protein.
Length = 1052
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -1
Query: 644 RAKEISGAISPNCIGSSIFNRNLFISKYNAIALIVTDDAHL 522
RA +I ++ C + +N +FI N + DD H+
Sbjct: 356 RASKIGDTVTIFCQNGTTYNYRMFIQSKNTLLFNYNDDMHI 396
>AL110478-1|CAB54340.2| 537|Caenorhabditis elegans Hypothetical
protein Y26D4A.2 protein.
Length = 537
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -1
Query: 185 YHRYHLLKQSWLSSISRDISLSNWYLVMMCLINDSGTIISVI 60
Y YH LKQ+W ++ ++ ++ Y V+ +N+ T++ I
Sbjct: 273 YLPYHRLKQAWNANF-YNVKTTDKYYVVNTYVNEEATLVRSI 313
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,117,701
Number of Sequences: 27780
Number of extensions: 301383
Number of successful extensions: 925
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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