Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120763.seq
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05680.1 68416.m00634 expressed protein                             30   1.7  
At4g28500.1 68417.m04077 no apical meristem (NAM) family protein...    29   2.2  
At5g22720.1 68418.m02654 F-box family protein contains F-box dom...    29   3.8  
At5g14910.1 68418.m01749 heavy-metal-associated domain-containin...    28   6.7  
At5g15690.1 68418.m01835 hypothetical protein very low similarit...    27   8.9  
At4g04780.1 68417.m00700 expressed protein very low similarity t...    27   8.9  

>At3g05680.1 68416.m00634 expressed protein
          Length = 2057

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
 Frame = +1

Query: 328  LINDITPNKTESLKILSTQSVGARNLLEPM-QANETKIKLNRIETVNVLDFLGSVYDNTI 504
            LIN +TPN  +  KI+   +V A  +++ M +    +I   R+E  ++L  L  ++ +  
Sbjct: 1008 LINHLTPNLDKIAKIIQHHAVSALVVIQDMLRVFIVRIACQRVEHASIL--LRPIFSSIR 1065

Query: 505  QG*LQSKCASSVTMSAIALYLEINKLRLKIDEPMQLG 615
             G L    +S+    A  +Y  +N L   ++ P   G
Sbjct: 1066 DGILDQ--SSTRDTEAYMVYRYLNFLASLLEHPHAKG 1100


>At4g28500.1 68417.m04077 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 305

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 204 CRKHEEAAATDR-RQTLRANANGGRRHVANHQHHGLSNGR 320
           C     AAAT + R  L     GG RH+  H HH   NG+
Sbjct: 225 CGGSVAAAATAKDRPYLHGLGGGGGRHLHYHLHHNNGNGK 264


>At5g22720.1 68418.m02654 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 422

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
 Frame = +1

Query: 325 LLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLD---FLGSVYD 495
           L +N +   K ES+ +   +++   +L + + ANE  ++ + I T  VL+   F+   YD
Sbjct: 156 LRLNHVCLGKFESVSLPCLKTM---SLEQNIYANEADLE-SLISTCPVLEDLSFVSGAYD 211

Query: 496 NTIQG*LQSKCASSVTMSAIALYLEINKLRLKID 597
                 +QS+  +S+ +     YL+++K  + ID
Sbjct: 212 KVNVLRVQSQTLTSLNIEGCVEYLDLDKSEVLID 245


>At5g14910.1 68418.m01749 heavy-metal-associated domain-containing
           protein  Pfam profile PF00403: Heavy-metal-associated
           domain
          Length = 178

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
 Frame = +1

Query: 187 GHWQQHVANTKKPPQQTAGKPFGQTQMAAVDMLQ--TINTTASQTAASLLINDITPNKTE 360
           G   + VA  ++ PQ+T   P   + M  +      T+N  A       L  DI  +   
Sbjct: 66  GEGGEGVAVAEEQPQETVSVPVSPSDMLTMFFQADGTLNEAAIPNVTRAL-QDI--DGVS 122

Query: 361 SLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDF 477
           +LK+  ++ V    LL+      T +  N +ET+    F
Sbjct: 123 NLKVQVSEGVAVVELLKQTTVQATGVASNLVETIQGAGF 161


>At5g15690.1 68418.m01835 hypothetical protein very low similarity
           to MtN20 [Medicago truncatula] GI:2598591
          Length = 169

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -1

Query: 278 STAAICVCPKGLPAVC-CG-GFFVFATCCCQCPYHRYH 171
           S++   VCP G+P+ C CG     F +   + PY R++
Sbjct: 11  SSSGFRVCPPGVPSKCWCGEEIITFTSKTKENPYRRFY 48


>At4g04780.1 68417.m00700 expressed protein very low similarity to
           SP|Q13503 RNA polymerase II holoenzyme component SRB7
           (RNAPII complex component SRB7) {Homo sapiens}
          Length = 381

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -1

Query: 278 STAAICVCPKGLPAVC-CG-GFFVFATCCCQCPYHRYH 171
           S++   VCP G+P+ C CG     F +   + PY R++
Sbjct: 11  SSSGFRVCPPGVPSKCWCGEEIITFTSKTKENPYRRFY 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,937,274
Number of Sequences: 28952
Number of extensions: 268359
Number of successful extensions: 694
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)