Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120761.seq
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 137 9e-33
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 131 4e-31
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 127 7e-30
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 118 4e-27
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 3e-13
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 61 7e-10
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 55 6e-08
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 6e-04
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08) 31 0.66
SB_4173| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_56988| Best HMM Match : DUF229 (HMM E-Value=2e-06) 31 0.87
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 0.87
SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_24762| Best HMM Match : Astacin (HMM E-Value=0) 29 2.7
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 4.7
SB_12344| Best HMM Match : ATP-synt_B (HMM E-Value=1.9) 29 4.7
SB_55129| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_52653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_50059| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_42630| Best HMM Match : Ets (HMM E-Value=0) 28 8.1
SB_27502| Best HMM Match : Seryl_tRNA_N (HMM E-Value=1.6) 28 8.1
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 137 bits (331), Expect = 9e-33
Identities = 63/86 (73%), Positives = 74/86 (86%)
Frame = +1
Query: 256 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTGKPKIKVAYKGEDKTFLPEEVSS 435
NP NTIFDAKRLIGR+++DATVQ+DMK WPF+++S KPKI+V YKGE KTF EE+SS
Sbjct: 62 NPENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEISS 121
Query: 436 MVLTKMKETAEAYLGKTVQNAVITVP 513
MVL KMKETAEAYLG+ V +AVITVP
Sbjct: 122 MVLGKMKETAEAYLGQKVTSAVITVP 147
Score = 123 bits (296), Expect = 2e-28
Identities = 56/63 (88%), Positives = 59/63 (93%)
Frame = +2
Query: 74 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 253
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 254 RTP 262
P
Sbjct: 61 LNP 63
Score = 81.8 bits (193), Expect = 5e-16
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLTK 632
PAYFNDSQRQATKDAGTI+GLNVLR+INEPTAAA+AYGL K
Sbjct: 147 PAYFNDSQRQATKDAGTIAGLNVLRVINEPTAAALAYGLDK 187
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 131 bits (317), Expect = 4e-31
Identities = 59/86 (68%), Positives = 69/86 (80%)
Frame = +1
Query: 256 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTGKPKIKVAYKGEDKTFLPEEVSS 435
NP NT+FDAKRLIGRKF+D V DM HWPF V+ +PKI+V +KGE K+F PEE+SS
Sbjct: 62 NPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEISS 121
Query: 436 MVLTKMKETAEAYLGKTVQNAVITVP 513
MVLTKMKETAEAYLG V +AV+TVP
Sbjct: 122 MVLTKMKETAEAYLGAKVTDAVVTVP 147
Score = 127 bits (306), Expect = 1e-29
Identities = 59/63 (93%), Positives = 60/63 (95%)
Frame = +2
Query: 74 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 253
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 254 RTP 262
P
Sbjct: 61 MNP 63
Score = 83.4 bits (197), Expect = 2e-16
Identities = 39/43 (90%), Positives = 42/43 (97%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLTKRV 638
PAYF+DSQRQATKDAGTI+GLNVLRIINEPTAAAIAYGL K+V
Sbjct: 147 PAYFHDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKV 189
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = +2
Query: 626 DKKGTXERNVLIXXLGGXTF 685
DKK ERNVLI LGG TF
Sbjct: 186 DKKVGVERNVLIYDLGGGTF 205
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 127 bits (307), Expect = 7e-30
Identities = 58/64 (90%), Positives = 60/64 (93%)
Frame = +2
Query: 74 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 253
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 254 RTPT 265
PT
Sbjct: 61 MNPT 64
Score = 111 bits (268), Expect = 4e-25
Identities = 63/111 (56%), Positives = 71/111 (63%), Gaps = 25/111 (22%)
Frame = +1
Query: 256 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTGKPKIKVAYKGEDKTFLPEEV-- 429
NP NTIFDAKRLIGR+F+D V+ DMKHW FEVV+ G+PK+KV YKGE KTF EEV
Sbjct: 62 NPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVVN 121
Query: 430 -----------------------SSMVLTKMKETAEAYLGKTVQNAVITVP 513
SSMVL KMKETAEAYLG V +AV+TVP
Sbjct: 122 EAGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVP 172
Score = 84.6 bits (200), Expect = 7e-17
Identities = 40/43 (93%), Positives = 41/43 (95%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLTKRV 638
PAYFNDSQRQATKDAG ISGLNVLRIINEPTAAAIAYGL K+V
Sbjct: 240 PAYFNDSQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKV 282
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = +1
Query: 415 LPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 513
L ++SSMVL KMKETAEAYLG V +AV+TVP
Sbjct: 208 LKMQISSMVLNKMKETAEAYLGCKVTDAVVTVP 240
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAG 557
PAYFNDSQRQATKDAG
Sbjct: 172 PAYFNDSQRQATKDAG 187
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = +2
Query: 626 DKKGTXERNVLIXXLGGXTF 685
DKK ERNVLI LGG TF
Sbjct: 279 DKKVGQERNVLIFDLGGGTF 298
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 118 bits (284), Expect = 4e-27
Identities = 55/86 (63%), Positives = 68/86 (79%)
Frame = +1
Query: 256 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTGKPKIKVAYKGEDKTFLPEEVSS 435
NP NT+FDAKRLIGR ++D +VQ D+K +PF+VV KP ++V K E KTF EE+S+
Sbjct: 760 NPENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISA 819
Query: 436 MVLTKMKETAEAYLGKTVQNAVITVP 513
MVLTKMKETAEAYLGK V +AV+TVP
Sbjct: 820 MVLTKMKETAEAYLGKKVTHAVVTVP 845
Score = 97.5 bits (232), Expect = 9e-21
Identities = 45/58 (77%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
Frame = +2
Query: 92 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARTP 262
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ P
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNP 761
Score = 76.6 bits (180), Expect = 2e-14
Identities = 34/42 (80%), Positives = 39/42 (92%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLTKR 635
PAYFND+QRQATKDAG I+GL V+RIINEPTAAAIAYG+ K+
Sbjct: 845 PAYFNDAQRQATKDAGAIAGLTVMRIINEPTAAAIAYGMDKK 886
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 72.5 bits (170), Expect = 3e-13
Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTGKP-KIKVAYKGEDKTFLPEEVS 432
N NTI KR IGRKF D VQ ++ H P++VV I+V Y G+ + F PE+V
Sbjct: 118 NLKNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVM 177
Query: 433 SMVLTKMKETAEAYLGKTVQNAVITVP 513
+M+ T++K TAE L V + VI+VP
Sbjct: 178 AMLFTRLKTTAEIALKTKVTDCVISVP 204
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/53 (39%), Positives = 34/53 (64%)
Frame = +3
Query: 492 ECSYHGPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLTKRVLENE 650
+C P+Y+ D QR+ DA +GLN LR++N+ TA ++AYG+ K+ L +
Sbjct: 198 DCVISVPSYYTDRQRRCMLDASATAGLNCLRLMNDTTAVSLAYGIYKQDLPTD 250
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +2
Query: 92 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 247
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 61.3 bits (142), Expect = 7e-10
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = +2
Query: 80 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 253
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 254 RTP 262
P
Sbjct: 90 INP 92
Score = 57.6 bits (133), Expect = 9e-09
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXT-GKPKIKVAYKGEDKTFLPEEVS 432
NP NTI+DAKR IG+ F + K + F V + G V KG PEE+
Sbjct: 91 NPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEIG 150
Query: 433 SMVLTKMKETAEAYLGKTVQNAVITVP 513
V+ K++ AE L TV AV++VP
Sbjct: 151 GYVIKKLRTMAERNLTTTVTKAVMSVP 177
Score = 55.6 bits (128), Expect = 4e-08
Identities = 25/42 (59%), Positives = 33/42 (78%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLTKR 635
PA F+ QR AT A +++G+ VLR+INEPTAAA+AYGL K+
Sbjct: 177 PAEFDIKQRNATVKAASLAGITVLRVINEPTAAALAYGLHKK 218
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 54.8 bits (126), Expect = 6e-08
Identities = 36/65 (55%), Positives = 40/65 (61%), Gaps = 24/65 (36%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAGTISGLN------------------------VLRIINEPTAAAIA 617
PA+FND+QRQATKDAGTI+GL+ VLRIINEPTAAAIA
Sbjct: 46 PAHFNDAQRQATKDAGTIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIA 105
Query: 618 YGLTK 632
YGL K
Sbjct: 106 YGLDK 110
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/45 (51%), Positives = 34/45 (75%)
Frame = +1
Query: 379 IKVAYKGEDKTFLPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 513
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITVP
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVP 46
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLTKRVLENE 650
P +FN ++R+A A + GLNVL+I+N TA A+ YGL ++ N+
Sbjct: 113 PPFFNQAERRALLRAAELVGLNVLQIMNSNTAVALNYGLFQQKSFND 159
Score = 34.7 bits (76), Expect = 0.071
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 373 PKIKVAYKGEDKTFLPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 513
P +K Y+ D TF PEE+ M+L + E + +++ V+TVP
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVP 113
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +2
Query: 143 GKVEIIANDQGNRTTPSYVAFTDTERLI 226
G IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
Length = 1011
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1
Query: 370 KPKIKVAYKGEDKTFLPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPRTSMTLKDKPQK 549
+PK K + E+ L EE +M ++K LGK V+ + T ++TL + Q
Sbjct: 654 QPKFKKTKEEEEFDKLLEEADAMTQQEVKNVKNIKLGKNVKTQLYTCEPCNITLNSQKQM 713
Query: 550 MQ 555
Q
Sbjct: 714 SQ 715
>SB_4173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 743
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Frame = +2
Query: 473 ISAKLCRMQLSRSRVLQ*LSKTSH---KRCRYHLRLERSPNH 589
+SAKLC + ++ S++++ L SH ++C Y +++E SP H
Sbjct: 655 LSAKLCHV-ITLSKIVRALQTHSHLHKRQCSYQIQIETSPAH 695
>SB_56988| Best HMM Match : DUF229 (HMM E-Value=2e-06)
Length = 286
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Frame = +2
Query: 473 ISAKLCRMQLSRSRVLQ*LSKTSH---KRCRYHLRLERSPNH 589
+SAKLC + ++ S++++ L SH ++C Y +++E SP H
Sbjct: 198 LSAKLCHV-VTLSKIVRALQTHSHLHKRQCSYQIQIETSPAH 238
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +2
Query: 152 EIIANDQGNRTTPSYVAFT-DTERL 223
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 61 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCR 237
L++ N + ++ + R GY L R C R + +R + H++L R +RC
Sbjct: 225 LRLVNTRDDKTHDKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTETETRFCAKRCA 282
Query: 238 QEPGGENPNNTIFDA 282
G +P NT F+A
Sbjct: 283 GTASGMDPKNTPFNA 297
>SB_24762| Best HMM Match : Astacin (HMM E-Value=0)
Length = 733
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 555 LHLLWLVFESH*STRDRDNCILHSFAEIS 469
++ LWL F + S+ D C+LHS A ++
Sbjct: 415 IYTLWLDFSRYYSSASSDICVLHSIAHLA 443
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 20 HVC*VVLRTSNKTD*KYKMAKAPAVGIDL 106
HVC +V T K K ++K PA GI+L
Sbjct: 1200 HVCNIVSNTETKITCKLDVSKTPAPGIEL 1228
>SB_12344| Best HMM Match : ATP-synt_B (HMM E-Value=1.9)
Length = 341
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/101 (22%), Positives = 41/101 (40%)
Frame = +1
Query: 235 RQEPGGENPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSXTGKPKIKVAYKGEDKTF 414
R+ G + + T + +IG F QAD+ + + K+++ F
Sbjct: 53 RKSTGKVDNSKTYTAGRYMIGPDFTFKKYQADLHFVQLDTFAVFTSGKLELL-----SVF 107
Query: 415 LPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPRTSMTLKD 537
+P +V S L+++ ETA VQ + T +KD
Sbjct: 108 IPNDVKSRYLSQVIETANEERETFVQREKLVRKETEKLIKD 148
>SB_55129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/69 (33%), Positives = 32/69 (46%)
Frame = -1
Query: 321 HSSIFELTSDETFGIEYCVVGVLATWFLAASPMRRSVSVNAT*DGVVLLPWSLAMISTFP 142
+S + L + T +EY +GVLATW R + V AT L W L +++T
Sbjct: 23 YSRLGVLATWSTGDLEYWRLGVLATWSTGDLEYSR-LGVLATWSTGDLEYWRLGVLAT-- 79
Query: 141 CWKTPTQEY 115
W T EY
Sbjct: 80 -WSTGDLEY 87
>SB_52653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 369
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = -2
Query: 422 SGKKVLSSPLYATLILGLPVSLTTSKGQCFMSACTVASSNLRPMRRLASNIVLLGFSPPG 243
+ K+++S LY T GLPV T G C A + + L + L PG
Sbjct: 279 TAKELVSVDLYLTK--GLPVCTTVRAGACNRLVLDAARACYNKRKSLERTVNFLKIDFPG 336
Query: 242 SW 237
W
Sbjct: 337 RW 338
>SB_50059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +3
Query: 201 RSQTPSVSSEMPPRTRWREPQQHNIRCQTSHRT*VRRCYCAS 326
R+ P S+ PP RW+ P Q QT H R Y S
Sbjct: 37 RTAEPLSHSKRPPPRRWKAPLQRCRMSQTQHGYRQGRAYTFS 78
>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
Length = 631
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 102 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 245
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 42 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 89
>SB_27502| Best HMM Match : Seryl_tRNA_N (HMM E-Value=1.6)
Length = 163
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +1
Query: 247 GGENPNNTIFDA--KRLIGRKFEDATVQADMKHWPFEVVSXTGKPKIKVAYKGEDKTFLP 420
GG+ ++ + A +RL ++ + +V A + ++ KP + +K P
Sbjct: 47 GGKTSSDNVLSAIAERLNMKEKTEKSVNAQLTELVNNLIFKAEKPDEAEMKESMEKIIRP 106
Query: 421 EEVSSMVLTKMKE 459
E SS+V TK+ E
Sbjct: 107 ENCSSLVATKLDE 119
>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 977
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 102 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 245
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 388 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 435
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,835,716
Number of Sequences: 59808
Number of extensions: 524301
Number of successful extensions: 1627
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1619
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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