Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120760.seq
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    28   1.1  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    26   4.5  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   5.9  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   5.9  

>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -2

Query: 548 GFLXLFI-AVLQFRYRSNFVAFDTFHF-YTLIYNIC 447
           GF+ + I A+ QF+ RS  VAF +F +   L+Y IC
Sbjct: 120 GFIPVLIKAMKQFKDRSENVAFTSFRYALFLVYYIC 155


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 598 SFLNCLDFLNQIRPNS*VFXIFSSLFYNFGTVRTLLHLTRFIFIHLST 455
           S    L F+N    ++ +F  FSS    FGT+  +  L  +I  H +T
Sbjct: 390 SSFGLLAFMNTKSSSATIFGYFSSAVTVFGTINWINILLSYICYHRAT 437


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 526 AMKRXKKPTNWAEFDLKNLSSLESYETLKIKLALSKYMAML 648
           A+++ K    WA F+LK  S +E Y  L +K     ++ +L
Sbjct: 824 AIEKTKVELTWAHFELKVASHVE-YMQLSVKAKARSHILLL 863


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 4   HEVFSNTVPAYL-LIRGDYESSSELKSLRDLNPWVQNTLLKLLIPDS 141
           HE+ SN    ++ LIRG  E ++ L+S+   +P  Q  +LK L+ D+
Sbjct: 692 HEL-SNLAERFVSLIRGPEEWTNRLRSVLSTSPKPQLKVLKSLLVDA 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,182
Number of Sequences: 5004
Number of extensions: 42832
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)