Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120760.seq
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653...    29   2.7  
06_03_0757 + 24267599-24268882                                         29   2.7  
10_07_0161 - 13674631-13675433,13675793-13675862                       28   6.2  
04_04_0224 - 23738105-23738273,23738364-23738472,23738702-237388...    28   6.2  

>06_03_0793 + 24662506-24663512,24664470-24664787,24664996-24665323,
            24665465-24665887,24665960-24666252,24666332-24666605,
            24666856-24667358,24667464-24667785,24667875-24668220,
            24668339-24668997,24669524-24669625,24669656-24670052,
            24670155-24670270,24670360-24670386
          Length = 1704

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 517  CKTAMKRXKKPTNWAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTPPLLE 681
            CK +M   + PT+   F L  +  +  Y   +I+L  S+   +LS   ++  LLE
Sbjct: 1024 CKVSMTELQSPTDPRIFCLTKIVEIAHYNVNRIRLVWSRIWKVLSEFFVSVGLLE 1078


>06_03_0757 + 24267599-24268882
          Length = 427

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 617 NWRSANTWLCSAPWK*PRRCWK 682
           +WR A  W+C  PW   ++ W+
Sbjct: 348 SWRPAGPWVCFNPWPAQQQAWR 369


>10_07_0161 - 13674631-13675433,13675793-13675862
          Length = 290

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 617 NWRSANTWLCSAPWK*PRRCWK 682
           +WR A  W+C  PW   +  W+
Sbjct: 229 SWRPAGPWVCFNPWPAQQLAWR 250


>04_04_0224 -
           23738105-23738273,23738364-23738472,23738702-23738804,
           23738895-23738926,23739342-23739592,23739639-23739754,
           23740271-23740526,23740760-23740847,23740985-23741062,
           23741238-23741313,23741532-23741590,23742639-23742711
          Length = 469

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 94  LNREGISTQTNFRNHLLLKDMQ 29
           +NREGIS   N  N LLLK +Q
Sbjct: 77  INREGISYYNNLINELLLKGVQ 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,130,719
Number of Sequences: 37544
Number of extensions: 240146
Number of successful extensions: 489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)