Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120760.seq
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY519857-1|AAR89638.1|  444|Caenorhabditis elegans nematode poly...    37   0.016
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly...    37   0.016
AF106581-3|AAO25985.1|  399|Caenorhabditis elegans Nematode poly...    37   0.016
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly...    37   0.016
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly...    37   0.016
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei...    37   0.016
AL132862-34|CAB60536.2|  395|Caenorhabditis elegans Hypothetical...    27   9.7  

>AY519857-1|AAR89638.1|  444|Caenorhabditis elegans nematode
           polyprotein allergen related,post-translationnally
           cleaved, the diverse 14.5 kDa cleavageproducts bind
           lipids and retinol (51.7 kD) protein.
          Length = 444

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 502 ERYRN-CKTAMKRXKKPTNWAEFDLKNLSSLESYETLKIKL 621
           E+++N C T  K   KPT W E  +K L + E + TLK+KL
Sbjct: 219 EKFQNQCMTWAKEVSKPTEWEE--IKKLHAAEDFNTLKLKL 257


>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
            polyprotein allergen related,post-translationnally
            cleaved, the diverse 14.5 kDa cleavageproducts bind
            lipids and retinol (164.6 kD) protein.
          Length = 1440

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 502  ERYRN-CKTAMKRXKKPTNWAEFDLKNLSSLESYETLKIKL 621
            E+++N C T  K   KPT W E  +K L + E + TLK+KL
Sbjct: 1215 EKFQNQCMTWAKEVSKPTEWEE--IKKLHAAEDFNTLKLKL 1253


>AF106581-3|AAO25985.1|  399|Caenorhabditis elegans Nematode
           polyprotein allergen relatedprotein 1, isoform b
           protein.
          Length = 399

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 502 ERYRN-CKTAMKRXKKPTNWAEFDLKNLSSLESYETLKIKL 621
           E+++N C T  K   KPT W E  +K L + E + TLK+KL
Sbjct: 174 EKFQNQCMTWAKEVSKPTEWEE--IKKLHAAEDFNTLKLKL 212


>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
            polyprotein allergen relatedprotein 1, isoform c protein.
          Length = 1198

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 502  ERYRN-CKTAMKRXKKPTNWAEFDLKNLSSLESYETLKIKL 621
            E+++N C T  K   KPT W E  +K L + E + TLK+KL
Sbjct: 973  EKFQNQCMTWAKEVSKPTEWEE--IKKLHAAEDFNTLKLKL 1011


>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
            polyprotein allergen relatedprotein 1, isoform a protein.
          Length = 1440

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 502  ERYRN-CKTAMKRXKKPTNWAEFDLKNLSSLESYETLKIKL 621
            E+++N C T  K   KPT W E  +K L + E + TLK+KL
Sbjct: 1215 EKFQNQCMTWAKEVSKPTEWEE--IKKLHAAEDFNTLKLKL 1253


>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
            protein.
          Length = 1198

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 502  ERYRN-CKTAMKRXKKPTNWAEFDLKNLSSLESYETLKIKL 621
            E+++N C T  K   KPT W E  +K L + E + TLK+KL
Sbjct: 971  EKFQNQCMTWAKEVSKPTEWEE--IKKLHAAEDFNTLKLKL 1009


>AL132862-34|CAB60536.2|  395|Caenorhabditis elegans Hypothetical
           protein Y73F8A.11 protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
 Frame = +1

Query: 496 KFERYRNCKTAMKRXKKPTNWAE-------FDLKNLSSLESYETLKIKL-ALSKYMAMLS 651
           + ER   C T   +   PT+WA        F+ KN+ S++S  ++ + +    + M ML+
Sbjct: 167 ELERMYKCDTMYNKYWLPTHWANQLVHKAMFETKNVDSVQSMNSVLMNIKEFRQSMEMLT 226

Query: 652 TLEMTP 669
             +  P
Sbjct: 227 KYDWVP 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,528,508
Number of Sequences: 27780
Number of extensions: 233599
Number of successful extensions: 538
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)