Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120760.seq
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38200.1 68417.m05392 guanine nucleotide exchange family prot...    30   1.3  
At3g60860.1 68416.m06808 guanine nucleotide exchange family prot...    28   5.1  
At4g35380.1 68417.m05026 guanine nucleotide exchange family prot...    28   6.8  

>At4g38200.1 68417.m05392 guanine nucleotide exchange family protein
            similar to Brefeldin A-inhibited guanine
            nucleotide-exchange protein 2 [Homo sapiens] SP|Q9Y6D5;
            contains Pfam profile PF01369: Sec7 domain
          Length = 1698

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 517  CKTAMKRXKKPTNWAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTPPLLE 681
            CK +M   + PT+   F L  L  +  Y   +I+L  S+  ++LS   ++  L E
Sbjct: 1024 CKVSMSELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRIWSILSDFFVSVGLSE 1078


>At3g60860.1 68416.m06808 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor, Homo
            sapiens, GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1793

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 517  CKTAMKRXKKPTNWAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMT 666
            CK +M   + P+N   F L  +  +  Y   +I+L  S    +LS   +T
Sbjct: 1094 CKVSMDELRSPSNPRVFSLTKIVEIAHYNMNRIRLVWSSIWQVLSGFFVT 1143


>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor [Homo
            sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1706

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +1

Query: 517  CKTAMKRXKKPTNWAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTPPLLE 681
            CK +M   + PT+   F L  L     Y   +I+L  S+   +LS   ++  L E
Sbjct: 1038 CKVSMSELQSPTDPRVFSLTKLVETAHYNMNRIRLVWSRIWNVLSDFFVSVGLSE 1092


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,561,599
Number of Sequences: 28952
Number of extensions: 211029
Number of successful extensions: 403
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)