Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120759.seq
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    26   0.25 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.3  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    22   4.1  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   9.5  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 406 IVLS*TLPKKSNTLTVSILFNLILVSLACIGSNRLRAPTD*VDKIFKLSVF 254
           ++ S T P++   L    L N I +++  +GS    A TD   K F++S F
Sbjct: 348 LMFSATFPEEVQQLAGKFLLNYIFIAVGIVGS----ACTDVEQKFFQVSKF 394


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = -2

Query: 170 ICVCAEGFAGGXXXXXXRVCD 108
           IC C  GF G        +CD
Sbjct: 46  ICTCKPGFTGSNCQNRINLCD 66


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = -2

Query: 89  ISSISFIEAIMVEFDKQR 36
           ++++S +  +MV+FDK+R
Sbjct: 307 LNTVSTLLIVMVQFDKER 324


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 519 SPIARLVYF*PQFVYF 472
           SPI+RLVY      YF
Sbjct: 47  SPISRLVYIGTDLSYF 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,186
Number of Sequences: 336
Number of extensions: 3168
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)