Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120759.seq
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    26   4.4  
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    26   4.4  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    26   5.9  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    25   7.8  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    25   7.8  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   7.8  

>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = -2

Query: 524 PYRQLLGSSIFNRNLFIS 471
           PYR+++ SS++NRN+ ++
Sbjct: 243 PYREVIESSLYNRNVSVA 260


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 22/88 (25%), Positives = 36/88 (40%)
 Frame = +3

Query: 96  WQQHVANTKKPPQQTAGKPFGANANGGRRHVANHQHHGLSNGRVVVNQRHYAQKTESLKI 275
           +QQ +ANT+  P QTA K    N    ++ +   Q   L   +   N    A  TESLK 
Sbjct: 45  FQQKIANTRPGPGQTALKQRAMNVL-RQKKIYESQLQQLQ--QQSFNMEQAAMTTESLKN 101

Query: 276 LSTQSVGARNLLEPMQANETKIKLNRIE 359
                   +     +++    + + +IE
Sbjct: 102 TMATVQTMQETARQLKSQSKNVSIEKIE 129


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 421 QSKCASSVTMSAIALYLEINKLRLKIDEPS-NWRYGPRYFLCSATNIKT 564
           QS   +S  +  IA    +    L+ D PS  WR  PR++L   TN+K+
Sbjct: 164 QSHPRASSFVDKIAAATTVQFRNLQTDAPSVKWRM-PRFWLKRRTNVKS 211


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 543 LCDEHQNVQLNTDVLINFI 599
           +CD H+N   N D+L  F+
Sbjct: 387 ICDLHENTSFNIDILPGFL 405


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 295 ERAICWNRCKPTRPKLS*IESKRSTC*TFWGAFTTTRSK 411
           E   C N   P  P+++ +  + S     +G+ +TTRSK
Sbjct: 172 ENESCLNNAAPGSPEVAVLSFRHSFHGRLFGSLSTTRSK 210


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 88  YHRYHLLKQSWLSSISRDISLS 23
           Y++  L K+SW  S+S +ISLS
Sbjct: 107 YYQEALRKKSWSRSLSNNISLS 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,232
Number of Sequences: 5004
Number of extensions: 51556
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)