Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120759.seq
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0585 - 18998013-18998306,18998448-18998630,18999048-189990... 31 0.65
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325... 30 1.5
02_04_0132 - 20058638-20058907 29 3.5
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 29 3.5
06_01_1126 - 9277885-9277935,9278129-9278209,9278297-9278350,927... 29 4.6
01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165 29 4.6
01_05_0635 - 23847255-23847287,23847397-23848083,23848178-238485... 29 4.6
12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,178... 28 6.0
11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185... 28 6.0
>10_08_0585 -
18998013-18998306,18998448-18998630,18999048-18999089,
18999226-18999495,18999903-19000454,19000546-19000770,
19001435-19001640,19001738-19001936,19002166-19002381,
19002887-19002991,19003127-19003243,19003366-19003548,
19004292-19004468,19004714-19004816,19005066-19005523
Length = 1109
Score = 31.5 bits (68), Expect = 0.65
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Frame = -2
Query: 569 LHVLMFVAEQRKYLGPY-RQLLGSSI--FNRNLFISKYNAIALIVTDDAHLLCNYHLDRV 399
L+V +FVA+ ++YL P+ +LL + I + R+L A++++V D + Y L+++
Sbjct: 425 LNVAVFVAQYKEYLHPFAEELLCNKISHWERSLRELAAQALSMLVQYDMNYFAGYALEKL 484
Query: 398 V 396
V
Sbjct: 485 V 485
>06_01_0456 -
3249662-3249710,3249838-3250451,3250694-3250780,
3251509-3252384,3252445-3252534,3252645-3252696,
3253117-3253168,3253265-3253363,3253444-3253528,
3253620-3253668,3253749-3253816,3254417-3254482,
3255690-3255741,3256685-3256767,3256915-3256946,
3257271-3257466,3258542-3258607,3259797-3259869,
3260010-3260224
Length = 967
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 123 KPPQQTAGKPFGANANGG-RRHVANHQHHGLSNGRVVVNQRHYAQKTESLKILSTQSVG 296
+PP G+ GANA+G ++H H +SN + Q AQ + + ++L +Q G
Sbjct: 773 RPPPGVPGQAIGANAHGAPPAQQSHHVHRLVSNLMNQLGQATVAQPSTAPQVLPSQPGG 831
>02_04_0132 - 20058638-20058907
Length = 89
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 223 RPFERPWC*WFATCRRPPFA 164
+PF PWC + C +PPF+
Sbjct: 14 KPFVAPWCRYPLLCNQPPFS 33
>02_01_0471 -
3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -3
Query: 658 DAMAALLFKIVFCDLRATCIIKFINTSVFNCTF*CSSQSK 539
D+ +L + +C+ A IIK ++T VF C C+S+S+
Sbjct: 456 DSQVSLSISVAYCEQCARWIIKVLST-VFPCIKACASESE 494
>06_01_1126 -
9277885-9277935,9278129-9278209,9278297-9278350,
9278433-9278564,9278641-9278715,9279056-9279133,
9279215-9279327,9279421-9279535,9280565-9280754,
9281355-9281464,9281559-9281654,9281756-9281818,
9281911-9281988,9282452-9282564,9282664-9282721,
9282797-9282920,9282999-9283060,9283131-9283195,
9283264-9283324,9284242-9284307,9284472-9284531,
9284830-9284960,9285517-9285592,9285701-9285769,
9286065-9286112,9286552-9286671,9286918-9287034,
9287290-9287405,9288348-9288519,9289057-9289100,
9290359-9290712,9291680-9291806
Length = 1072
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 145 PAVCCGGFFVFATCCCQCPYHRYHLLKQ 62
P F A+CCC+ P H+ HL Q
Sbjct: 105 PVDATAPFVASASCCCRHPVHQQHLRLQ 132
>01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165
Length = 476
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 154 KGLPAVCCG--GFFVFATCCCQCPYHRYHLLKQSWLSSISRDISLS 23
K LP + CG G ++F T + + +YHL ++W I I S
Sbjct: 386 KALPTIFCGDTGGYIFHTPPTELFFTQYHLSSRTWSPLIDGSIGNS 431
>01_05_0635 -
23847255-23847287,23847397-23848083,23848178-23848540,
23848633-23848725,23848820-23848870,23849031-23849304,
23849766-23850595
Length = 776
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +3
Query: 123 KPPQQTAGKPFGANANGGRRH--VANHQHHGLSNGRVVVNQRHYAQKTESLKILSTQSVG 296
+P A P A GG R + NH HHGL ++ Y Q + L S+Q G
Sbjct: 13 QPWSSAAPAPASAPGRGGARREILTNHHHHGLKE-KMRALTLFYEQHKQQL--ASSQGGG 69
Query: 297 AR 302
AR
Sbjct: 70 AR 71
>12_01_0237 +
1782593-1782778,1784942-1784996,1785086-1787028,
1787103-1787261,1787432-1787603,1787705-1788003,
1788278-1788583
Length = 1039
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -2
Query: 206 VVLMVCNMSTAAICVCAEGFAGGXXXXXXRVCDMLLPVSISSIS 75
++LMVC + + A+ + EG+ G + + L V ++++S
Sbjct: 177 IILMVCALLSVAVGLATEGWPKGMYDGLGIILSIFLVVMVTAVS 220
>11_01_0240 +
1852186-1852371,1854183-1854237,1854391-1856267,
1856342-1856500,1856692-1856863,1856965-1857263,
1857539-1857844
Length = 1017
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -2
Query: 206 VVLMVCNMSTAAICVCAEGFAGGXXXXXXRVCDMLLPVSISSIS 75
++LMVC + + A+ + EG+ G + + L V ++++S
Sbjct: 155 IILMVCALLSVAVGLATEGWPKGMYDGLGIILSIFLVVMVTAVS 198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,514,504
Number of Sequences: 37544
Number of extensions: 341150
Number of successful extensions: 948
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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