Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120759.seq
         (687 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC028587-1|AAH28587.1|  482|Homo sapiens NEK11 protein protein.        35   0.31 
AB071997-1|BAC06351.1|  470|Homo sapiens NIMA-related kinase 11S...    35   0.31 
AB071996-1|BAC06350.1|  645|Homo sapiens NIMA-related kinase 11L...    35   0.31 
DQ232881-1|ABB18374.1|  868|Homo sapiens LIN41 protein.                30   8.9  

>BC028587-1|AAH28587.1|  482|Homo sapiens NEK11 protein protein.
          Length = 482

 Score = 34.7 bits (76), Expect = 0.31
 Identities = 25/83 (30%), Positives = 40/83 (48%)
 Frame = +3

Query: 177 RRHVANHQHHGLSNGRVVVNQRHYAQKTESLKILSTQSVGARNLLEPMQANETKIKLNRI 356
           RR+V   +    S G V +     A++ E LK+L   SVG  N  E +QAN     L+++
Sbjct: 27  RRYVLQQKLGSGSFGTVYLVSDKKAKRGEELKVLKEISVGELNPNETVQANLEAQLLSKL 86

Query: 357 ETVNVLDFLGSVYDNTIQVIVTE 425
           +   ++ F  S  +     I+TE
Sbjct: 87  DHPAIVKFHASFVEQDNFCIITE 109


>AB071997-1|BAC06351.1|  470|Homo sapiens NIMA-related kinase 11S
           protein.
          Length = 470

 Score = 34.7 bits (76), Expect = 0.31
 Identities = 25/83 (30%), Positives = 40/83 (48%)
 Frame = +3

Query: 177 RRHVANHQHHGLSNGRVVVNQRHYAQKTESLKILSTQSVGARNLLEPMQANETKIKLNRI 356
           RR+V   +    S G V +     A++ E LK+L   SVG  N  E +QAN     L+++
Sbjct: 27  RRYVLQQKLGSGSFGTVYLVSDKKAKRGEELKVLKEISVGELNPNETVQANLEAQLLSKL 86

Query: 357 ETVNVLDFLGSVYDNTIQVIVTE 425
           +   ++ F  S  +     I+TE
Sbjct: 87  DHPAIVKFHASFVEQDNFCIITE 109


>AB071996-1|BAC06350.1|  645|Homo sapiens NIMA-related kinase 11L
           protein.
          Length = 645

 Score = 34.7 bits (76), Expect = 0.31
 Identities = 25/83 (30%), Positives = 40/83 (48%)
 Frame = +3

Query: 177 RRHVANHQHHGLSNGRVVVNQRHYAQKTESLKILSTQSVGARNLLEPMQANETKIKLNRI 356
           RR+V   +    S G V +     A++ E LK+L   SVG  N  E +QAN     L+++
Sbjct: 27  RRYVLQQKLGSGSFGTVYLVSDKKAKRGEELKVLKEISVGELNPNETVQANLEAQLLSKL 86

Query: 357 ETVNVLDFLGSVYDNTIQVIVTE 425
           +   ++ F  S  +     I+TE
Sbjct: 87  DHPAIVKFHASFVEQDNFCIITE 109


>DQ232881-1|ABB18374.1|  868|Homo sapiens LIN41 protein.
          Length = 868

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 108 VANTKKPPQQT--AGKPFGANANGGRRHVANHQH 203
           VA   +PP +   AG P GA  +   RH A+H H
Sbjct: 124 VATADEPPPKNGRAGAPAGAGGHSNHRHHAHHAH 157


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,413,235
Number of Sequences: 237096
Number of extensions: 1804110
Number of successful extensions: 4296
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4294
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)