Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120759.seq
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z46267-8|CAA86424.2| 1030|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z46267-7|CAA86429.2|  947|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z46267-6|CAA86428.2| 1215|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U88184-10|AAK31514.2|  728|Caenorhabditis elegans Hypothetical p...    28   7.2  
U88184-9|ABC71833.1|  843|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical
           protein F01G4.3 protein.
          Length = 1266

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 485 NLFISKYNAIA-LIVTDDAHLLCNYHLDRVVVNAPQKV*HVDRFDSIQLNFGLVGL 321
           +LF++ + +    +V + A  LC  H  R V  +P K     +F   +  FG VGL
Sbjct: 309 SLFVAAHTSAGKTVVAEYAIALCQAHKTRAVYTSPIKALSNQKFRDFKQIFGDVGL 364


>Z46267-8|CAA86424.2| 1030|Caenorhabditis elegans Hypothetical
           protein F49E2.5c protein.
          Length = 1030

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 24/109 (22%), Positives = 43/109 (39%)
 Frame = +3

Query: 87  YGHWQQHVANTKKPPQQTAGKPFGANANGGRRHVANHQHHGLSNGRVVVNQRHYAQKTES 266
           Y H      NT  P Q +   P     NG +   +  +HH   N +   ++       E 
Sbjct: 481 YEHVADVTGNTLSPSQHSTPSPNSVLLNGPQSKSSKRKHHHKKNKKRTDSEMSQEPSKED 540

Query: 267 LKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQV 413
           L+ L       + + +P+ A  +K K    + ++ LDF+ +  + T  V
Sbjct: 541 LEFLEFLHSEPKKVEKPV-APVSK-KPTADDNMDFLDFVTAKPEKTESV 587


>Z46267-7|CAA86429.2|  947|Caenorhabditis elegans Hypothetical
           protein F49E2.5b protein.
          Length = 947

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 24/109 (22%), Positives = 43/109 (39%)
 Frame = +3

Query: 87  YGHWQQHVANTKKPPQQTAGKPFGANANGGRRHVANHQHHGLSNGRVVVNQRHYAQKTES 266
           Y H      NT  P Q +   P     NG +   +  +HH   N +   ++       E 
Sbjct: 398 YEHVADVTGNTLSPSQHSTPSPNSVLLNGPQSKSSKRKHHHKKNKKRTDSEMSQEPSKED 457

Query: 267 LKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQV 413
           L+ L       + + +P+ A  +K K    + ++ LDF+ +  + T  V
Sbjct: 458 LEFLEFLHSEPKKVEKPV-APVSK-KPTADDNMDFLDFVTAKPEKTESV 504


>Z46267-6|CAA86428.2| 1215|Caenorhabditis elegans Hypothetical
           protein F49E2.5a protein.
          Length = 1215

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 24/109 (22%), Positives = 43/109 (39%)
 Frame = +3

Query: 87  YGHWQQHVANTKKPPQQTAGKPFGANANGGRRHVANHQHHGLSNGRVVVNQRHYAQKTES 266
           Y H      NT  P Q +   P     NG +   +  +HH   N +   ++       E 
Sbjct: 666 YEHVADVTGNTLSPSQHSTPSPNSVLLNGPQSKSSKRKHHHKKNKKRTDSEMSQEPSKED 725

Query: 267 LKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQV 413
           L+ L       + + +P+ A  +K K    + ++ LDF+ +  + T  V
Sbjct: 726 LEFLEFLHSEPKKVEKPV-APVSK-KPTADDNMDFLDFVTAKPEKTESV 772


>U88184-10|AAK31514.2|  728|Caenorhabditis elegans Hypothetical
           protein F36H5.3a protein.
          Length = 728

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +3

Query: 210 LSNGRVVVNQRHYAQKTE-SLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLG 386
           LS G+ V + R ++   E  LK++S+   G   +   +    TKI+L  ++T ++++   
Sbjct: 67  LSCGQCVQDSRKWSLSIEVELKLMSSSEKGFSKVRRLLVKTLTKIELQLLDTEDLIENFV 126

Query: 387 SVYDNTIQVIV 419
           S     IQV V
Sbjct: 127 SAESVRIQVDV 137


>U88184-9|ABC71833.1|  843|Caenorhabditis elegans Hypothetical
           protein F36H5.3b protein.
          Length = 843

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +3

Query: 210 LSNGRVVVNQRHYAQKTE-SLKILSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLG 386
           LS G+ V + R ++   E  LK++S+   G   +   +    TKI+L  ++T ++++   
Sbjct: 67  LSCGQCVQDSRKWSLSIEVELKLMSSSEKGFSKVRRLLVKTLTKIELQLLDTEDLIENFV 126

Query: 387 SVYDNTIQVIV 419
           S     IQV V
Sbjct: 127 SAESVRIQVDV 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,208,062
Number of Sequences: 27780
Number of extensions: 307542
Number of successful extensions: 922
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)