Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120756.seq
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54R97 Cluster: Putative uncharacterized protein; n=4; ...    36   0.72 
UniRef50_A0BMJ1 Cluster: Chromosome undetermined scaffold_116, w...    34   3.8  

>UniRef50_Q54R97 Cluster: Putative uncharacterized protein; n=4;
            Dictyostelium discoideum AX4|Rep: Putative
            uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1122

 Score = 36.3 bits (80), Expect = 0.72
 Identities = 31/110 (28%), Positives = 46/110 (41%)
 Frame = +3

Query: 156  VKHNQKNDVICFSKLNWLYE*NSTCKT*SRNDV*GDVICXSKLNWLYE*NSTCKTRSRND 335
            + +N+ NDV C S  N +   N +      N+   DV C S  N +   N+     ++ND
Sbjct: 1015 ISNNKNNDVACSSNNNKINNNNIS------NNNNKDVACSSNNNKINN-NNNISNNNKND 1067

Query: 336  VICFSKLNLRNDVICFSKLNWLYE*NSTCKTQSKGDVICXXDVTCFSKLN 485
            V C S  N  N+ +  S +N     N      +  + I   DV C S  N
Sbjct: 1068 VACSSNNNKTNNDLARSSINNNKTNNINSSNNNNNNTI--GDVACSSNNN 1115


>UniRef50_A0BMJ1 Cluster: Chromosome undetermined scaffold_116,
           whole genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_116,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 632

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = +1

Query: 142 AEFYL*STIKKMMSFVFQN*TGFTSRILRVKHDQEMMSE 258
           AE+ L S +KK++ F+F+N T + S  LRV H+   +SE
Sbjct: 553 AEYQLKSHVKKIIGFIFRNSTIYKSNDLRVIHNPLKISE 591


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,462,646
Number of Sequences: 1657284
Number of extensions: 9584137
Number of successful extensions: 13300
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13263
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)