Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120756.seq
         (696 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   5.5  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   7.3  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +1

Query: 7   RLITEFVLRVEFYL*RTIKK*CHLFCNMISYNMTHLFF 120
           R++  F++ +      T     H+  N   Y  TH+FF
Sbjct: 39  RILKYFIIAIYVLTILTSSVTLHVCFNSYMYAFTHIFF 76


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +2

Query: 38  NSTCNAQSRNDVICFAI*YHTI*LICFSKSNLIYGQNS 151
           N  C    +N   C A       L+  SKS   YG+ S
Sbjct: 45  NGECVINKKNRTACKACRLRKCLLVGMSKSGSRYGRRS 82


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,510
Number of Sequences: 336
Number of extensions: 2754
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)