Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120756.seq
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38449| Best HMM Match : zf-C3HC4 (HMM E-Value=3.5)                  42   6e-04
SB_43608| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.51 
SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 29   2.7  

>SB_38449| Best HMM Match : zf-C3HC4 (HMM E-Value=3.5)
          Length = 184

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
 Frame = +3

Query: 144 RILLVKHNQKNDV-ICFSKLNWLYE*NSTCKT*SRNDV*GDVICXSKLNWLYE*NSTCKT 320
           RI   K  Q   V IC   + WLY     C+  SR ++    IC   + WL+     C+ 
Sbjct: 14  RICQSKGRQNLSVAICQFSVRWLYAFKRVCRFVSRQNL-SVAICQCSVRWLFAVKRVCRI 72

Query: 321 RSRNDVICFSKLNLRNDVICFSKLNWLYE*NSTCK-TQSKGDVICXXDVTCFSKLNWLY 494
           R         + NL +  IC S + WLY     C+  QS G       + C   + WL+
Sbjct: 73  RQST-----GRQNL-SVAICQSSVRWLYAFKRVCRICQSTGRQNLSVTI-CECSVRWLW 124



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
 Frame = +3

Query: 198 LNWLYE*NSTCK---T*SRNDV*GDVICXSKLNWLYE*NSTCKTRSRNDVICFSKLNLRN 368
           + WLY     C+   +  R ++    IC   + WLY     C+  SR ++         +
Sbjct: 3   VRWLYAFKRVCRICQSKGRQNL-SVAICQFSVRWLYAFKRVCRFVSRQNL---------S 52

Query: 369 DVICFSKLNWLYE*NSTCKTQSKGDVICXXDVTCFSKLNWLY 494
             IC   + WL+     C+ +            C S + WLY
Sbjct: 53  VAICQCSVRWLFAVKRVCRIRQSTGRQNLSVAICQSSVRWLY 94



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
 Frame = +3

Query: 183 ICFSKLNWLYE*NSTCK---T*SRNDV*GDVICXSKLNWLYE*NSTCKTRSRNDVICFS- 350
           IC   + WL+     C+   +  R ++    IC S + WLY     C+       IC S 
Sbjct: 55  ICQCSVRWLFAVKRVCRIRQSTGRQNL-SVAICQSSVRWLYAFKRVCR-------ICQST 106

Query: 351 -KLNLRNDVICFSKLNWLYE*NSTCKTQSKG-DVIC 452
            + NL +  IC   + WL+     C+  S+  D IC
Sbjct: 107 GRQNL-SVTICECSVRWLWAFKRVCRFVSRQVDKIC 141


>SB_43608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 2/135 (1%)
 Frame = +2

Query: 239 IKK*CLR*CHLXFETELALRVEFYV*NAIKK*CHLFFKTEFKK*CHLFFKTELALRVEFY 418
           IKK  +    + F+TE+  + E  +   +     +  +TE      +  KTE+ ++ E  
Sbjct: 52  IKKEVIIKTEVIFKTEVTTKTEVTIKKEVIIETEVIIETEVTTKTEVIVKTEVIIKTEVI 111

Query: 419 V*NTIER*CHLXX*CHLFFKTELALRVEFYCKTQSKYDVIXYKNKIDVMFCTRLI--TNS 592
               +     +     +  KTE+  + E   KT+   +      K +V+  T +I  T  
Sbjct: 112 FKTEVTTKTEVTIKKEVIIKTEVIFKTEVTTKTEVIIET-EVTTKTEVIVKTEVIIETEV 170

Query: 593 LYE*NSTRKTRLIIK 637
           + E   T KT +I+K
Sbjct: 171 IIETEVTTKTEVIVK 185


>SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1358

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 7/143 (4%)
 Frame = +3

Query: 150  LLVKHNQKNDVICFSKLNWLYE*NSTCKT*SRNDV*GDVICXSKLNWLYE*NSTCKTRSR 329
            L+ K N  +D+   +K+N  ++     K     +V  D+   +K+N  ++     K    
Sbjct: 1181 LVAKVNVSHDMTLVAKVNVSHDMTLVAKV----NVSHDMTLVAKVNVSHDMTLVAKVNVS 1236

Query: 330  NDVICFSKLNLRNDVICFSKLNWLYE*NSTCKTQSKGD------VICXXDVTCFSKLNWL 491
            +D+   +K+N+ +D+   +K+N  ++     K     D      V    D+T  +K+N  
Sbjct: 1237 HDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVS 1296

Query: 492  YE*NSTVKHN-QNMMSXVIKIKL 557
            ++     K N  + M+ V K+ +
Sbjct: 1297 HDMTLVAKVNVSHDMTLVAKVNM 1319



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/99 (21%), Positives = 45/99 (45%)
 Frame = +3

Query: 150  LLVKHNQKNDVICFSKLNWLYE*NSTCKT*SRNDV*GDVICXSKLNWLYE*NSTCKTRSR 329
            L+ K N  +D+   +K+N  ++     K     +V  D+   +K+N  ++     K    
Sbjct: 1253 LVAKVNVSHDMTLVAKVNVSHDMTLVAKV----NVSHDMTLVAKVNVSHDMTLVAKVNVS 1308

Query: 330  NDVICFSKLNLRNDVICFSKLNWLYE*NSTCKTQSKGDV 446
            +D+   +K+N+ +D+   +K+N  +E     K     D+
Sbjct: 1309 HDMTLVAKVNMSHDMSLVAKVNVSHEMTLVAKVNVSHDM 1347



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
 Frame = +3

Query: 261  DVICXSKLNWLYE*NSTCKTRSRNDVICFSKLNLRNDVICFSKLNWLYE*NSTCKTQSKG 440
            D+   +K+N L++     K    +D+   +K+N+ +D+   +K+N  ++     K     
Sbjct: 1166 DMTLVAKVNVLHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSH 1225

Query: 441  D------VICXXDVTCFSKLNWLYE*NSTVKHN-QNMMSXVIKIKL 557
            D      V    D+T  +K+N  ++     K N  + M+ V K+ +
Sbjct: 1226 DMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNV 1271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,786,257
Number of Sequences: 59808
Number of extensions: 339406
Number of successful extensions: 429
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)