Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120756.seq
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.8  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 285 NWLYE*NSTCKTRSRNDVICFSKLN-LRNDVICFSKL 392
           NW+ + NS     +RN + CF  +N L    I + K+
Sbjct: 545 NWMLDLNSGLNKITRNSLDCFFTMNDLEPSEIFYEKI 581


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 285 NWLYE*NSTCKTRSRNDVICFSKLN-LRNDVICFSKL 392
           NW+ + NS     +RN + CF  +N L    I + K+
Sbjct: 545 NWMLDLNSGLNKITRNSLDCFFTMNDLEPSEIFYEKI 581


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 318 TRSRNDVICFSKLNLRNDVICFSKLNWLYE*NST 419
           +RS   +I  S +NL   ++C S L+W    NST
Sbjct: 278 SRSTERMIAAS-VNLICHILCMSDLHWQLPHNST 310



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 138 TGRILLVKHNQKNDVICFSKLNWLYE*NST 227
           T R++    N    ++C S L+W    NST
Sbjct: 281 TERMIAASVNLICHILCMSDLHWQLPHNST 310


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 87   IAKQMTSFLDCALQVEFY 34
            + K +T+ +DC+ Q E+Y
Sbjct: 955  VKKHITTTIDCSTQSEYY 972


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,015
Number of Sequences: 438
Number of extensions: 2995
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)